PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2183
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 94aa    MW: 10483.9 Da    PI: 8.5247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2183genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.62e-0728612154
                 HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH 21 eeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 ++Lr llP+ +  ++s K+s + +L+++++YI+sL
  Gh_D07G2183 28 SKLRHLLPEiR-DNRSDKVSASKVLQETCNYIRSL 61
                 79*******76.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.978761IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-72266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-72679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-52861IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSRRSSSRQ STGGVSRISD DQIIALVSKL RHLLPEIRDN RSDKVSASKV LQETCNYIRS  60
LHKEVEDLSD RLFQLLATID ADGAEAAIIR SLLM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443316.17e-52PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX14e-37PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2P5S9233e-59A0A2P5S923_GOSBA; Uncharacterized protein
STRINGGorai.001G256200.13e-51(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-38bHLH family protein