PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G0824 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 512aa MW: 55164.7 Da PI: 6.1223 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.2e-30 | 279 | 337 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Gh_D07G0824 279 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILITTYEGNHNHP 337 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-33 | 263 | 339 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.01E-27 | 271 | 339 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.643 | 273 | 339 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 278 | 338 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 280 | 337 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MAKTSGLSNI DFDPNYFLIH NPPVLNSFPE YTPKDTNKNN NNKTMFSGTT TTPANMSLPS 60 TVDRFPVKFD CFSDQTLPSF LPSDDDKRRV VGELDFFAEK NDKLVDVADS MHTSDAGLEL 120 NVNIGLNLLT ANTSTDQSTM EDKKANNEVA VLRAKLIQMN AENERLKEML IQATENYNTM 180 KIHLCSLMMK NGGKAKEEDE ENKKRNGGII VPRQFIDLGL AVAADAHESS PSSPEGKSQR 240 EDSSGGDNKG PGFDVDQSEA AMRKARVSVR ARSDAPMITD GCQWRKYGQK MAKGNPCPRA 300 YYRCTMATGC PVRKQVQRCA EDRTILITTY EGNHNHPLPP SAMSMASTTS SAARMLVSGS 360 TSSPDGLMNS NLLTTTLLPC SSTMATISAS TRFPSVTLDL TQSSFSSPPP PYNVANSVAF 420 TAALVPQVFG QALDNQSKFS GIQMSKALDR LQQGEQNSIA DTVNAATAAI ATDPSFAAAL 480 AAAITSIIES SQSHPNNGHN SNGNVTNTSN AV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-23 | 265 | 340 | 1 | 75 | WRKY transcription factor 1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031095 | 0.0 | KF031095.1 Gossypium hirsutum WRKY transcription factor 54 (WRKY54) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472519.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-120 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A0D2PWT1 | 0.0 | A0A0D2PWT1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G094300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24794 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-107 | WRKY family protein |