PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G0592

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 314aa MW: 34090.5 Da PI: 7.4038

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G0592	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.9	9.3e-38	38	97	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds ntkfCyynny+lsqPr+fCk+Cr yWtkGG lrnvPvGgg+rk k+++ Gh_D07G0592 38 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRHYWTKGGILRNVPVGGGCRKAKRTK 97 6899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	38	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.7E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.751	41	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MQDIHSIKGG CIFGGGGGGG GGGGGGDKRL RSHHHHNHQA LKCPRCDSLN TKFCYYNNYN 60 LSQPRHFCKS CRHYWTKGGI LRNVPVGGGC RKAKRTKTKA SSQTTAVAAS ALPPPEQQHG 120 DQRKANSHSS SESSSLTATN SNVAVPNQNN YSSAAGTAEA VTSHSNLINL SEPKFYGNPN 180 NLGLEPGLLE QGSDCGIFPE IGSFTSLITS SNNETMSFGF DKVLNGQALE QGQWQQRHQK 240 MMRMGGDEIN GGLLDQTVQV ELSNMHSRSE NGFGALDWQG NEDQGLFDLP NDVDKTYWSQ 300 TQWPDQDHHG LYLP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.11113	0.0	boll\| ovule\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468879.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	A0A2P5SGE7	0.0	A0A2P5SGE7_GOSBA; Uncharacterized protein
STRING	Gorai.001G067000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-51	OBF binding protein 4