PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G0251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARR-B | ||||||||
Protein Properties | Length: 665aa MW: 72861.4 Da PI: 5.3843 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.1 | 9.3e-29 | 208 | 261 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av++L G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl Gh_D07G0251 208 KPRVVWSVELHRKFVAAVNHL-GLDKAVPKKILDLMNVEGLTRENVASHLQKYRL 261 79*******************.********************************8 PP | |||||||
2 | Response_reg | 80.1 | 7.1e-27 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ +++l ++l k +y +v+++ ++ +al++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ +++ + + Ga Gh_D07G0251 26 VLAVDDDPICLKVLGTLLLKCQY-QVTTTNQAISALKMLRENRnrYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGITHGAC 120 799********************.***************999889*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + Gh_D07G0251 121 DYLLKPVRIEELKN 134 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 5.8E-171 | 1 | 662 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 2.7E-42 | 23 | 178 | No hit | No description |
SuperFamily | SSF52172 | 2.28E-35 | 23 | 147 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 8.3E-33 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.781 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.6E-24 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.70E-28 | 27 | 139 | No hit | No description |
PROSITE profile | PS51294 | 12.375 | 205 | 264 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.17E-20 | 205 | 265 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-30 | 206 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-25 | 208 | 261 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-7 | 210 | 260 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MTMEEKMGGS NREDEALDRF PVGMRVLAVD DDPICLKVLG TLLLKCQYQV TTTNQAISAL 60 KMLRENRNRY DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMKGITHGAC 120 DYLLKPVRIE ELKNIWQHVV RRKKPDSKDR VNALNQDKAS GGIGEAVQTS TSSSDQKFNK 180 KRKDQNEDEE DDGEDNEHEN DDPSTQKKPR VVWSVELHRK FVAAVNHLGL DKAVPKKILD 240 LMNVEGLTRE NVASHLQKYR LYLKRLSSVA TQQANMVAAL GGKDPSYLRM GSLDGFGDFR 300 TLTGSGRLSS ASLSSYQPSG MFGRLNSSAA LNLRGISSGV IQQGHPQTLS NSINGLGKIQ 360 PVGLPANQNQ NGTLFQGIPT SIELNQLLQN KSANHFGELN PVNNPNVSGV ATNFPDARMT 420 VGSSSSSLST PSGSPLLLQA NTQQAQRSGA FGNQSSLDVA FLNQESFDMG VHGFSNFADN 480 GGCHENWQNT VQLSSFPSNS LSTCEAFSHE QLHTNNLQES ISWRSSHLSD NPIDLSASMA 540 NAGLEDSRGD MQCQISPSNN VIHNIDYAAK QQWGENSSFA GADSLVAGAP YVQHLEAGKL 600 AFNTKLRSNE DILFEQRKPQ NEFSQNNFET LDVISSPMIK PEQYNETGMM EGELGYDAFP 660 LGSCI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-26 | 204 | 267 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3627 | 1e-171 | ovule |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 73860806 | 1e-171 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ525107 | 5e-65 | HQ525107.1 Gossypium herbaceum clone NBRI_A_EYI1BW401BL3EZ simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016744709.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
Swissprot | Q6K8X6 | 1e-144 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A1U8P3D3 | 0.0 | A0A1U8P3D3_GOSHI; Two-component response regulator | ||||
STRING | Gorai.001G030600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-123 | response regulator 12 |
Publications ? help Back to Top | |||
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