PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D07G0016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 392aa MW: 44578.3 Da PI: 5.7819 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 68 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ C+k ++++ + +H+++ H Gh_D07G0016 68 YSCGLCDKGYRSSKAYSQHLKSraH 92 99******************98666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 0.073 | 1 | 35 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 1.0E-5 | 3 | 36 | No hit | No description |
SMART | SM00355 | 33 | 4 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00451 | 0.92 | 65 | 99 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 2.09E-6 | 67 | 104 | No hit | No description |
SMART | SM00355 | 0.45 | 68 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.265 | 68 | 97 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 5.2E-6 | 68 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.71E-6 | 152 | 226 | No hit | No description |
Pfam | PF12756 | 2.6E-25 | 167 | 268 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 25 | 216 | 243 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 392 aa Download sequence Send to blast |
MPGLTCNACN REFLDEAERK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QAALAEEKDK 60 QNETPMLYSC GLCDKGYRSS KAYSQHLKSR AHIAQASQHP EEEKAAIIKP FIRRAVNKPP 120 QPRDTNDEES DDDWVEVDPD EDLASGDEMD IDNAEETGQE ELDPCCCFMC DLKHDTIESC 180 MVHMHKFHGF FIPDVEYLKN PEGLLIYLGL KVKRDFICLY CNERCHPFTS LEAVRKHMAA 240 KGHCKVHYGD GDEDEEAELE EFYDYSSSYV DDWGKQLVAV GDKDSTVELS GGSELIITRK 300 SDEGIMSKTL GSREYSRYYR QSPRPSPANN MAITAALASR YRSMGLATVQ SKEQIVRMKV 360 MKAMNRSGVE TMRTKVGMKN NVIQNLPKNV PY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6qik_z | 3e-22 | 4 | 371 | 6 | 411 | Cytoplasmic 60S subunit biogenesis factor REH1 |
6qt0_z | 3e-22 | 4 | 371 | 6 | 411 | Cytoplasmic 60S subunit biogenesis factor REH1 |
6qtz_z | 3e-22 | 4 | 371 | 6 | 411 | Cytoplasmic 60S subunit biogenesis factor REH1 |
6ri5_z | 3e-22 | 4 | 371 | 6 | 411 | Cytoplasmic 60S subunit biogenesis factor REH1 |
6s05_z | 3e-22 | 4 | 371 | 6 | 411 | Cytoplasmic 60S subunit biogenesis factor REH1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.7680 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250|UniProtKB:P38344, ECO:0000269|PubMed:24038679}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016720597.1 | 0.0 | PREDICTED: cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like | ||||
Swissprot | Q8H1G5 | 0.0 | REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 | ||||
TrEMBL | A0A1U8M1C3 | 0.0 | A0A1U8M1C3_GOSHI; cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like | ||||
STRING | Gorai.001G001500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3429 | 5 | 11 |
Publications ? help Back to Top | |||
---|---|---|---|
|