PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G0903 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 504aa MW: 55038.6 Da PI: 9.0599 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Gh_D06G0903 70 FMCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Gh_D06G0903 147 WKCEKCSKTYAVQSDWKAHSKIC 169 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.37E-7 | 69 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-5 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 6.4E-5 | 70 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.031 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 240 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.37E-7 | 142 | 167 | No hit | No description |
SMART | SM00355 | 110 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MDERMSNLTS TSGEFSASPG TVLYPPQQSF ASTNQAPAAA KKKRNLPGNP DPDAEVIALS 60 PKTLLATNRF MCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVVRKK VYVCPETTCV 120 HHDPARALGD LTGIKKHFCR KHGEKKWKCE KCSKTYAVQS DWKAHSKICG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAE ESARAITGPA QQVPGGSSVS HMNNLQSQLH NHDFHGLSVK 240 REEHPFNARP TTEDSLNPPW PGPPPINLLD HPLSQNENPS QNTGSNTLLP PFQTQTASPH 300 MSATALLQKA AQMGVTMSQP LQSPVAAMAS MQRPYMSGGT SGSTSFALST AGSGLGLFPR 360 EDLGSGSPHG LASLGNKAAA AITSGFMEQS PTAAPNSLLH DMMCSLSTGF DGSSSFEQSF 420 NRVWNTKGNP IDFQEPTTDH LSKAKESHSQ GNNMGGNDGM TRDFLGLKAF PHRDFPNLAA 480 LNHRLNPSSR FGQQNQHSQT PWQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 109 | KLKQRTNKEVVRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.10509 | 0.0 | boll| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016682996.1 | 0.0 | PREDICTED: protein indeterminate-domain 7-like | ||||
Swissprot | Q8H1F5 | 1e-115 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A1U8IY52 | 0.0 | A0A1U8IY52_GOSHI; protein indeterminate-domain 7-like | ||||
STRING | Gorai.010G099600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-118 | indeterminate(ID)-domain 7 |
Publications ? help Back to Top | |||
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