PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0070
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 391aa    MW: 42844.6 Da    PI: 4.6129
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0070genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM331.8e-104113119127
          NAM  19 LkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116
                  L+k ++g++l++   + ev+ y+++P+ Lp       + ++f +++        + n  +++g Wk + + +ev+s ++  +g ++tL++ kg+ ++ 
  Gh_D06G0070  41 LNKLTSGSPLPC--NVIEVNPYSFKPEYLP-------DGMWFLTSS--------NDNTDMEHGLWKVKEEAREVFS-NSDIIGWRTTLAYDKGQVSHE 120
                  666666666666..3556778888888887.......223333333........23445689**************.999****************** PP

          NAM 117 ektdWvmheyr 127
                  +ktdWvm+ ++
  Gh_D06G0070 121 HKTDWVMQVFS 131
                  *******9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575127No hitNo description
PROSITE profilePS5100516.35624155IPR003441NAC domain
SuperFamilySSF1019416.8E-1632154IPR003441NAC domain
PfamPF023651.3E-448131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MASSRLTPSY SENQITMNAS AASLSACIAI TSTNEELFIG LNKLTSGSPL PCNVIEVNPY  60
SFKPEYLPDG MWFLTSSNDN TDMEHGLWKV KEEAREVFSN SDIIGWRTTL AYDKGQVSHE  120
HKTDWVMQVF SATQKRLCDE NANKETISMC RVFLVPSDEM QEKVSSARIG TENHLPQPPI  180
LEANCGTGIG SSSNHQVNKH DEKEGLAVAG TIPVPEHQDE NDVGMDCFTD AYIDSFSRGD  240
FLEMNDLVNH VSSSSSGNSS APSMSSDECF DSMAFLQDLD QDLVLEQNDM GKKLNVSASN  300
RLDEVVLVPA ALGSVVSIEG NDSSSNELLK TTSSVPNSAN NNEISKHAMG NQRDEGPSSS  360
SSAKPKSSRR KRDALGRVKE LRKKYLCFMP F
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.51520.0boll| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272737e-94HQ527273.1 Gossypium herbaceum clone NBRI_B_EYI1BW404IOGW8 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016727678.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_016727679.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_016727680.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_016727681.10.0PREDICTED: NAC domain-containing protein 82-like
TrEMBLA0A1U8MLI00.0A0A1U8MLI0_GOSHI; NAC domain-containing protein 82-like
STRINGGorai.010G012000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137081023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.13e-11NAC domain containing protein 28