PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G2965 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 416aa MW: 46364.4 Da PI: 8.2217 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.1 | 7.3e-06 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Gh_D05G2965 58 YVCEICSQGFQRDQNLQMHRRRH 80 9*********************9 PP | |||||||
2 | zf-C2H2 | 15.2 | 6e-05 | 135 | 157 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k + +s++k H++t+ Gh_D05G2965 135 WVCDKCRKGYAVQSDFKAHLKTC 157 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.66E-5 | 57 | 80 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.8E-5 | 57 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.907 | 58 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.011 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS01359 | 0 | 60 | 140 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 99 | 129 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.0E-4 | 126 | 156 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.66E-5 | 130 | 155 | No hit | No description |
SMART | SM00355 | 68 | 135 | 162 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MLGYTTSASA LPSSSSDPLS PLENGDTQKR KRKPAGTPDP DAEVVSLSPK TLLESDRYVC 60 EICSQGFQRD QNLQMHRRRH KVPWKLLKRE NQEVKKRVFV CPEPSCLHHD PCHALGDLVG 120 IKKHFRRKHS KQKQWVCDKC RKGYAVQSDF KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ 180 DSCSARPIQP ELLTAVMPSC SSRTAPSTSP SSDTNLNFSI APTGTPLPGL PMPRSTEPVF 240 LYSQAPTLDY HRHHRLLQHD LELQLLPSSS AHSTWWNSDE NENRATNLKL SIGSSESVEK 300 IEANKLANAT ETALEALKEL AIAEKTYAEK ARIEAKRQIE MAELEFSSAK RIRQQAQSEL 360 EKAQALKDEA TKKINAIIMQ ITCGACKHQL RAATADDETS LAMSYMSSAT TEGEGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-17 | 132 | 185 | 4 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 4e-17 | 132 | 185 | 4 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}. | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016685597.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like | ||||
Swissprot | F4IPE3 | 1e-157 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A1U8J5H3 | 0.0 | A0A1U8J5H3_GOSHI; protein SHOOT GRAVITROPISM 5-like | ||||
STRING | Gorai.009G329200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM693 | 28 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-112 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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