PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2044
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 610aa    MW: 65582.6 Da    PI: 8.0605
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2044genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.8e-24230274145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Gh_D05G2044 230 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 274
                  79****************************************985 PP
2QLQ61.22.9e-21160196137
          QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  ++FT++Q+++L++Q+l+yKy+ +n+P+P++Ll +i+k
  Gh_D05G2044 160 GPFTPSQWMELEHQALIYKYITSNVPIPSNLLIPIRK 196
                  59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.9E-12160196IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-15161195IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.641161196IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663230274IPR014977WRC domain
PfamPF088797.3E-21231273IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MDFGVVGLEG FVGSDTATTT TTTTTTAGCT SLAADPEAKQ KWYGSGFLKQ ERSGNNEDDW  60
RSSKLAKFDD FSTSKAALHN HRNTLLRSNF SIFSDGQHQQ QQMLSFSAPK SDALSVDTAS  120
QSVAFPYFQL TSPAYTRNTG YNTGGFNGAN MHGVLAGGRG PFTPSQWMEL EHQALIYKYI  180
TSNVPIPSNL LIPIRKSLDS ANFSLFSGGL LRPNTLGWGA FHLGFSNNTD PEPGRCRRTD  240
GKKWRCSRDA VADQKYCERH MNRGRHRSRK PVEGQSGHSA AAIAPAKLMP TVSSSASVLG  300
PTGGSGESNS LAIAQQQFKH SQPATASNLS AAATLNRLLL SKDTVGDTTP GLTMTSVTGD  360
LKSKENPFLI PKQQNSYEHH SRTEFGLVSS DSLLNPSHKI SALIKCRNFT SQETESQHSL  420
RQFMDECSKT QSDRSAISWP EIDVQSDRTQ LSISVPMAAS DYISFTSSTN NDKVTLSPLR  480
LSREFDPIHM GLGVGSVIND SNQRQANWIP ISWEASMGGP LGEVLHSTNS STGECKSSSA  540
LNLMTEGWDS SPRLGSSPTG VLQKTSFGSL SNSSAGSSPT AEHNKTHEGA SLCNNLLGSA  600
LVQSSSLPAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.151380.0ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5888905e-74JX588890.1 Gossypium hirsutum clone NBRI_GE23454 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687231.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A1U8JAA40.0A0A1U8JAA4_GOSHI; growth-regulating factor 1-like
STRINGGorai.009G222200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-115growth-regulating factor 1