PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1117
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 351aa    MW: 39614.5 Da    PI: 7.3714
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1117genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.8e-114399155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                 s y+GV++++++gr++A+++d  ++n  ++k+ + g +  +e Aa a++ a++k++g
  Gh_D05G1117 43 STYRGVTRHRWTGRFEAHLWDkNCWNEsQKKKGRQGAYADEEAAAHAYDLAALKYWG 99
                 56*******************99998886655566888888**************98 PP
2AP252.31.4e-16142193155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Gh_D05G1117 142 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 193
                  89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1543109IPR016177DNA-binding domain
PfamPF008471.6E-74499IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-1344108IPR001471AP2/ERF domain
SMARTSM003801.3E-1944113IPR001471AP2/ERF domain
PROSITE profilePS5103218.54544107IPR001471AP2/ERF domain
PRINTSPR003673.9E-64556IPR001471AP2/ERF domain
CDDcd000181.79E-24142203No hitNo description
PfamPF008471.4E-12142193IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-18142203IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-18143202IPR001471AP2/ERF domain
SMARTSM003803.5E-25143207IPR001471AP2/ERF domain
PROSITE profilePS5103218.36143201IPR001471AP2/ERF domain
PRINTSPR003673.9E-6183203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAKISHQDQK NGSGNEKTAA QPTTKLKRTR KTVPRHSPPQ RSSTYRGVTR HRWTGRFEAH  60
LWDKNCWNES QKKKGRQGAY ADEEAAAHAY DLAALKYWGQ DTVLNFPLST YEKELKEMES  120
QSKEEYIGSL RRKSSGFARG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA  180
AMAYDMAAIE YRGLNAVTNF DLSRYIGWLH PNDQSDSNNS SNPQQNFNGD TNSTPSPNHD  240
TKLEISIQSQ TYCTSDTRLD DSNSNGSSSS ASSALGHLLK SSKIKEMLDR TSEAACPSTP  300
PEPNVPRRSF PDYIQTYFDC QDSSSYTEDD DIIFGDLDSL AMPMFHCELD G
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447650.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-121AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2TNW80.0A0A0D2TNW8_GOSRA; Uncharacterized protein
STRINGGorai.009G122000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-95ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]