PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G0663

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 409aa MW: 46306.2 Da PI: 5.3799

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G0663	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.6e-05	68	92	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ Cgk ++++ + +H+++ H Gh_D05G0663 68 YSCGVCGKGYRSSKAYSQHLKSraH 92 99******************98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.37E-5	3	36	No hit	No description
SMART	SM00355	54	4	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	6	28	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.81E-6	67	104	No hit	No description
Pfam	PF12874	6.6E-4	68	92	No hit	No description
PROSITE profile	PS50157	9.743	68	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	68	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	92	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.19E-7	168	284	No hit	No description
Pfam	PF12756	4.8E-26	184	285	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	33	233	260	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MPGLTCNACN KEFLDDADQK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QSALAQEKEK 60 QNETPMLYSC GVCGKGYRSS KAYSQHLKSR AHIMQASQGT NHPQEVKAII KPLPRRTVNK 120 PPQPRDRNDD ESQDEWEEVD PEEELVGQAA NSLTHLNVTE DGAGNEMEEE EEEEEEEELD 180 PCCCFMCDLD HDTIESCMVH MHKLHGFFIP DVEYLKDPEG LLTYLGLKVK RDFMCLYCNE 240 RCHPFASLEA VRKHMAAKGH CKVHYGDGDE EEEAELEEFY DYSSSYVDES GKQLVAAGDT 300 GNSVELVGGS ELVITKRSDE GILSKTLGSR EYMRYYQQKP RPSPANNMAI TAALASRYRS 360 MGIATVQSRE QMVRMKVMKA MNRGGVEAMR TKVGMKNNVI RNLPKNVPY

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MPGLTCNACN KEFLDDADQK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QSALAQEKEK  60
QNETPMLYSC GVCGKGYRSS KAYSQHLKSR AHIMQASQGT NHPQEVKAII KPLPRRTVNK  120
PPQPRDRNDD ESQDEWEEVD PEEELVGQAA NSLTHLNVTE DGAGNEMEEE EEEEEEEELD  180
PCCCFMCDLD HDTIESCMVH MHKLHGFFIP DVEYLKDPEG LLTYLGLKVK RDFMCLYCNE  240
RCHPFASLEA VRKHMAAKGH CKVHYGDGDE EEEAELEEFY DYSSSYVDES GKQLVAAGDT  300
GNSVELVGGS ELVITKRSDE GILSKTLGSR EYMRYYQQKP RPSPANNMAI TAALASRYRS  360
MGIATVQSRE QMVRMKVMKA MNRGGVEAMR TKVGMKNNVI RNLPKNVPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6qik_z	3e-22	4	378	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
6qt0_z	3e-22	4	378	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
6qtz_z	3e-22	4	378	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
6ri5_z	3e-22	4	378	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
6s05_z	3e-22	4	378	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.12903	0.0	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250\|UniProtKB:P38344, ECO:0000269\|PubMed:24038679}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964399	4e-43	JX964399.1 Gossypium hirsutum clone NBRI_TRANS-668 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016689364.1	0.0	PREDICTED: cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like
Refseq	XP_016689365.1	0.0	PREDICTED: cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like
Swissprot	Q8H1G5	0.0	REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBL	A0A1U8JGF5	0.0	A0A1U8JGF5_GOSHI; cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like
STRING	Gorai.009G068400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3429	5	11

Publications ? help Back to Top
Schmidt S,Dethloff F,Beine-Golovchuk O,Kopka J The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiol., 2013. 163(4): p. 1623-39 [PMID:24038679] Beine-Golovchuk O, et al. Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiol., 2018. 176(3): p. 2251-2276 [PMID:29382692]