PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0587
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 665aa    MW: 72992.4 Da    PI: 6.0158
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0587genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.86.5e-25202252152
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                  kpr++W+ eLH++Fv av+qL G+ekA+Pk+ilelm+v+ Lt+e+v+SHLQ 
  Gh_D05G0587 202 KPRVVWSVELHRKFVAAVNQL-GIEKAVPKKILELMNVENLTRENVASHLQA 252
                  79*******************.*****************************5 PP
2Response_reg77.45.2e-26201281109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ + ll+++l+k +y +v++++++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+ +++ + +  Ga 
   Gh_D05G0587  20 VLAVDDDPTCLLLLETLLTKCKY-NVTTTSQAITALKMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTKLVMKGITHGAC 114
                   799********************.***************888888*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   Gh_D05G0587 115 DYLLKPVRIEELQN 128
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-3517141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.5E-4217141No hitNo description
SMARTSM004482.4E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.45219134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2320128IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.10E-2421134No hitNo description
SuperFamilySSF466896.27E-17199258IPR009057Homeodomain-like
PROSITE profilePS5129411.816199258IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-26200265IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-23202255IPR006447Myb domain, plants
PfamPF002491.2E-5204252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MRVERVISDE NDSFPVGMRV LAVDDDPTCL LLLETLLTKC KYNVTTTSQA ITALKMLREN  60
KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIT HGACDYLLKP  120
VRIEELQNIW QHVIRRKKFD RKDRNGSGSQ DKPYIDSSEA AGLGNVDQNG KFNKKRKDQN  180
EDEDEERDEN GHDNEDLSTQ KKPRVVWSVE LHRKFVAAVN QLGIEKAVPK KILELMNVEN  240
LTRENVASHL QALFLNLKFR LYLKRISCVA NQQANMAAAL GSVDSTHLRM GTMNGLGNFH  300
TLAGPDQIHN AAFRSFQHSG VLRRLNTPAG VGISGLPSSG LVQLSPVQNL GNTSTYQRKL  360
QSFVIPGNHN ANILQGMPMS LEFDQLQNNR AASHVGQFPS VDNTTVLPVS SISGSLIDAG  420
CSNSPLLGVT SNSLLLEGSS QLPTLHASNL RDSVSGFPNR STLSDFTSIA PASNQLHGSK  480
ADIQDQASPI SCNAGKIISS APQDWNAPKK DAPYQSNVPS CSINSLRAVN GDMAQLGQCL  540
DQNNPIFNRN VGFDFVDPLS IKCSEGENLA MEPSVIEKEG YLMVQPSRQG IYIPDNEGEN  600
FAMEPSVIEK EGYLIVQPRR QGSYIPGNLG SLEDLASAMT KQDHDKGKPT DGDFGYNDYS  660
LRTCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-23198267164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444721.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A2P5QIQ90.0A0A2P5QIQ9_GOSBA; Uncharacterized protein
STRINGGorai.009G061000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-137response regulator 12