PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G1974 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 201aa MW: 22853.5 Da PI: 6.1594 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 44.7 | 4.2e-14 | 4 | 56 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk 49 ++pGfrF Pt+eelv++yL++k+e ++ +++vi+ v+iy+++PwdLp+ Gh_D04G1974 4 MAPGFRFYPTEEELVSFYLHHKLEMERedlnRLMDRVIPIVNIYEFNPWDLPR 56 579********************99995653223347**************93 PP | |||||||
2 | NAM | 28.1 | 5.9e-09 | 57 | 82 | 102 | 127 |
NAM 102 lkktLvfykgrapkgektdWvmheyr 127 +k+t+vfy+grap+g +t+W m+ey+ Gh_D04G1974 57 VKRTMVFYNGRAPNGIRTEWKMNEYK 82 79***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-25 | 3 | 109 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 13.421 | 4 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-9 | 6 | 82 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEDMAPGFRF YPTEEELVSF YLHHKLEMER EDLNRLMDRV IPIVNIYEFN PWDLPRVKRT 60 MVFYNGRAPN GIRTEWKMNE YKAIEQGASS ISATPTLRHE FSLCRVYKKS KCLRSFDRRP 120 PAGGVQIIKP NAAAHQGEAT AGEAASGYHK SHQMAGSPES SSSEDHGNPS QTGASNDSSA 180 TVFNYDELFW NLDGFWESQI P |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441618.1 | 1e-134 | PREDICTED: NAC domain-containing protein 90-like isoform X2 | ||||
TrEMBL | A0A1U8NNI5 | 1e-132 | A0A1U8NNI5_GOSHI; NAC domain-containing protein 90-like isoform X2 | ||||
STRING | Gorai.009G399900.1 | 1e-132 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10159 | 10 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 6e-23 | NAC domain containing protein 61 |