PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1741
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 163aa    MW: 18770.8 Da    PI: 10.7191
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1741genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.8e-11997190
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsef 90
                 f k+l   ++  ++rl +pkk + +    +    ++++l+    + W++ +  + ++++    v+++GW++Fv  n+Lk gD v++++++++++
  Gh_D04G1741  9 FSKKL--TYTDINKRLAIPKKILPSLpRFNRSHAVKIQLMY-GTKIWSIDC--TVRKQWytkPVFSRGWRKFVVHNELKIGDKVTIYRVQHQDG 97
                 66777..66667788********999844444556666666.669******..66666655789***********************8866555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-12697IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.9827109IPR003340B3 DNA binding domain
CDDcd100175.29E-168107No hitNo description
Gene3DG3DSA:2.40.330.102.5E-13895IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00229104IPR003340B3 DNA binding domain
PfamPF023621.7E-81597IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAVQATIMFS KKLTYTDINK RLAIPKKILP SLPRFNRSHA VKIQLMYGTK IWSIDCTVRK  60
QWYTKPVFSR GWRKFVVHNE LKIGDKVTIY RVQHQDGSSH YRVEVEKPAA GNHEADETTV  120
TRHRREQLPN APMINMLANV AVTTLVDDHV IAKPLAKFFG TNN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430830.0AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458573.14e-53PREDICTED: uncharacterized protein LOC105779372
TrEMBLA0A2P5QDZ41e-113A0A2P5QDZ4_GOSBA; Uncharacterized protein
STRINGGorai.012G167700.11e-101(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16950410