PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1354
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 331aa    MW: 36606.5 Da    PI: 6.7104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1354genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-14130176455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h + ErrRR+ri+ +++ L+el+P++      K +Ka+iL  A+++IksL+
  Gh_D04G1354 130 LHTISERRRRERIRGKIQALQELMPNC-----NKWDKASILDDAINCIKSLK 176
                  699***********************8.....6*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-17123186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-18124190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.45126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11130175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-15132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDPQTSVSEF ISNISGHKDV GESSQNHGDE VLPHSLTIAA LVGQDDYFQN AFVMSSSFQT  60
HPINQNPQGI EFPEEISLEP DSGQSNQRKR KLFELENSKC LQQEIAGVSQ GLEGNQNQQQ  120
QPKQKRRGKL HTISERRRRE RIRGKIQALQ ELMPNCNKWD KASILDDAIN CIKSLKVQVE  180
MMSMARGAFY QVPYMSQALM HMRAGMVGMC FSSRLPTMPA ASPFSEPAGL PLMPGTGTRN  240
LGLPLLQMPF FHSQLPLPAA ATPTMLPNYL TPAALFYYSS QGEAVDTQNI VSTTSIDCQQ  300
IPITIQSHDN SFLGENCLAS SSPSKVPSSY Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124138KRRGKLHTISERRRR
2126138RGKLHTISERRRR
3134139ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016679362.10.0PREDICTED: transcription factor bHLH119-like
RefseqXP_016684584.10.0PREDICTED: transcription factor bHLH119-like
TrEMBLA0A1U8IML10.0A0A1U8IML1_GOSHI; transcription factor bHLH119-like
STRINGGorai.012G124100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2193445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-13phytochrome interacting factor 3-like 5