PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1685
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 575aa    MW: 65143 Da    PI: 9.0025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1685genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.2e-1623113299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  fk+    d+ ++g l +p+kf+++ g++  +    +l  +sg++W+v+l  +k+ g++++++GW eF +   L+ g  +vF++dg+s+f  +v +f++
  Gh_D03G1685  23 FKII-LQDTIQNGKLGVPRKFVKNQGNSMSS--PAMLSVPSGEVWKVEL--TKCNGKIWFENGWLEFSNHYSLDFGHLLVFRYDGNSNF--HVVIFDR 113
                  4544.468899999********666655444..69999***********..**********************************9999..**99997 PP
2B355.88.2e-18240329287
                  EEE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   2 fkvltpsdvlks....grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  + v+ ps+v+ s     rl +p +f+++h +k+ +s  +tl ++sg++W v+++     kk+ +y+lt GW  Fv++n++++gD + F+l+++
  Gh_D03G1685 240 LVVMQPSYVGLShskgYRLAIPANFVRKHLMKELCS--ITLCNSSGKTWIVTFKNnqiGKKQTSYLLT-GWGTFVHDNNIRVGDACAFELINS 329
                  5566666666554555899**********8887786..9999***********776645555557777.********************9975 PP
3B355.21.3e-17400493499
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  vl ps++   +r+ +p  fa+++  k   +k+ +l  ++g+sW v ++    + +  +   ++++GW++F ++n+L++gD++vF+l+   e++++v +
  Gh_D03G1685 400 VLQPSYS---RRMNIPVIFARKYLAK--MHKEAILLLSNGKSWPVIYCQhkiEST--GanAIFGSGWRRFSHDNKLEVGDSCVFELIMAAETSMKVAI 490
                  4433333...4678*********545..3457899999*********76543333..3569*************************988888899998 PP

                  E-S CS
           B3  97 frk 99 
                  ++k
  Gh_D03G1685 491 YKK 493
                  876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-2217114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2218113IPR015300DNA-binding pseudobarrel domain
CDDcd100172.78E-1720112No hitNo description
PROSITE profilePS5086313.28121114IPR003340B3 DNA binding domain
SMARTSM010194.2E-1722114IPR003340B3 DNA binding domain
PfamPF023622.3E-1323113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-23231339IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-23234341IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-20237339No hitNo description
SMARTSM010195.0E-14239342IPR003340B3 DNA binding domain
PROSITE profilePS5086313.606243342IPR003340B3 DNA binding domain
PfamPF023623.6E-15251331IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-23388494IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-22390493IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.987394494IPR003340B3 DNA binding domain
CDDcd100175.10E-20395492No hitNo description
SMARTSM010192.8E-16396494IPR003340B3 DNA binding domain
PfamPF023624.0E-16400493IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MASSSYRQGN DHLKFISNSP HFFKIILQDT IQNGKLGVPR KFVKNQGNSM SSPAMLSVPS  60
GEVWKVELTK CNGKIWFENG WLEFSNHYSL DFGHLLVFRY DGNSNFHVVI FDRTATEILY  120
PYTRYNHIHR RSNIDKSKDD DSTPNLEDIS TSRKLREKSQ MPCPQPCKMM HSTNSAIKTE  180
IECDGKSEFL AQQIRYEGCP ARNGDKSTRH RVIQQLKPHE KDDALERASK TFKSENPFFL  240
VVMQPSYVGL SHSKGYRLAI PANFVRKHLM KELCSITLCN SSGKTWIVTF KNNQIGKKQT  300
SYLLTGWGTF VHDNNIRVGD ACAFELINSI EISFNVVIYQ GPHTKCYQSL SSTDIIRPMK  360
RKDQSYASPS GSETLTALEK AKAFQVASAF KSEYPFFISV LQPSYSRRMN IPVIFARKYL  420
AKMHKEAILL LSNGKSWPVI YCQHKIESTG ANAIFGSGWR RFSHDNKLEV GDSCVFELIM  480
AAETSMKVAI YKKQAVKDSS LADNSREKQV ELHESSVIGT KSALMNEKED TSNLLLDYNC  540
DASGETLDDI LISNLSSPGR ALEEASQSYQ SFTRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1436649217141B3 domain-containing transcription factor VRN1
4i1k_B1e-1436649217141B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5782021e-127JX578202.1 Gossypium hirsutum clone NBRI_GE10175 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469504.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A0D2MI580.0A0A0D2MI58_GOSRA; Uncharacterized protein
STRINGGorai.003G020000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-41B3 family protein