PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G0923

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 310aa MW: 33405.6 Da PI: 6.8561

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G0923	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1e-38	34	94	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ Gh_D03G0923 34 NNQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSK 94 6799*****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.4E-33	36	92	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-27	37	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.506	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MQDIHLIGGG RVFSSGGGGG GGDRRLRLQH QQQNNQALKC PRCDSLNTKF CYYNNYNLSQ 60 PRHFCKSCRR YWTKGGVLRN VPVGGGCRKA KRSKTKPSSE STTVAAAAPA QPQSQQLLDQ 120 RKANSHSSSD SSSLIAANSN VAVANKNNND SSTGGMADAV SAVTSHSNNI NVSESKLYGN 180 PNNLVFEAGL LEQGSESGIF PEIGSFTSLV TSSNNETSSL GFGAVLNGQG QWQQQKMMSV 240 GGEEITGELL DQTMQVELSN LHGRSESGFG PLDWQGCGDQ PFFDLPNDVD QSYWSQSQWS 300 DQDHTALYLP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.13160	0.0	ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	2e-35	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	2e-35	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016740009.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	A0A1U8NPW7	0.0	A0A1U8NPW7_GOSHI; dof zinc finger protein DOF5.4-like
STRING	Gorai.003G103100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-40	OBF binding protein 4