PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0620
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 427aa    MW: 47343.7 Da    PI: 8.6838
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0620genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.3e-1364128155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng....kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  ++  n+    k+   +++  g ++ +e Aa+a++ a++k++g
  Gh_D03G0620  64 SIYRGVTRHRWTGRYEAHLWDkSTWnqNQnkkgKQglsQHIFSGAYDDEEAAARAYDLAALKYWG 128
                  57*******************7777752277773367788888********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1364137IPR016177DNA-binding domain
PfamPF008471.6E-964128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-1265137IPR001471AP2/ERF domain
PROSITE profilePS5103217.51765136IPR001471AP2/ERF domain
SMARTSM003805.3E-1865142IPR001471AP2/ERF domain
PRINTSPR003674.3E-56677IPR001471AP2/ERF domain
PRINTSPR003674.3E-5118138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MASTSSSDPG MKAEASGGEN SETVIANDQL LLCRGLKKAK KERGCTAKER ISKMPPCTAG  60
KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQGL SQHIFSGAYD DEEAAARAYD  120
LAALKYWGPG TLINFPVTDY TRDLEEMQNV SREDYLASLR RKSSGFSRGI SKYRGLSSRR  180
WDSSFGRVSG SEYFNSIHYG DDTTKENDYI GGFCIERKID LTGYIKWWGT NKTRQAEAGT  240
KSSEETKNAC PEDIGSELKT SEWAVQPTEP YQMPRLGTSL EGTKCKGSSV SALSILSRSA  300
DFKSLQEKAL KKQEQNSDND ENENKNTINK MDYGKAAEKS VNNDTGGDRL GAAMGMTGGL  360
SSLQKNVFPL TPFLSAPLLT NYNTIDSLVD PVLWTSLVPA LPTGPSRNPE VTKTETSSTY  420
TFFRPEE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.47440.0boll
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470674.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
RefseqXP_016734840.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-167AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0D2QQL80.0A0A0D2QQL8_GOSRA; Uncharacterized protein
TrEMBLA0A1U8N7A10.0A0A1U8N7A1_GOSHI; AP2-like ethylene-responsive transcription factor At2g41710
STRINGGorai.003G091500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-156AP2 family protein