PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G2121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 14714.1 Da PI: 10.0761 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.4 | 2e-16 | 18 | 109 | 3 | 94 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 k+lt dv+ + +++p ++eh +g+ +s + +++d+ +++W+++l rk++g+ vltkGW +Fvk gLk+gD v+F ++g+++ + + Gh_D02G2121 18 KILTATDVGVR--FSFPTATMREHfkllEGS--QSLDFQVMDKYSKVWTFRLYTRKNDGHpkPVLTKGWLDFVKRMGLKVGDKVIFVVHGNHNDH--L 109 66777777765..7***********977555..7889***************6688888899*************************98886663..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-21 | 13 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.09E-16 | 15 | 99 | No hit | No description |
SMART | SM01019 | 6.8E-10 | 16 | 115 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.89E-19 | 16 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.0E-13 | 18 | 107 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.982 | 53 | 115 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MHMQSSESEP GMKELCSKIL TATDVGVRFS FPTATMREHF KLLEGSQSLD FQVMDKYSKV 60 WTFRLYTRKN DGHPKPVLTK GWLDFVKRMG LKVGDKVIFV VHGNHNDHLG ILVKRNIKLL 120 GSEHWADL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109884040 | 1e-113 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481135.1 | 3e-91 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A2P5R585 | 7e-90 | A0A2P5R585_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G241200.1 | 9e-88 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17815 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21550.1 | 7e-08 | VP1/ABI3-like 3 |