PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G2120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 14796.3 Da PI: 10.2813 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.2 | 1.1e-16 | 18 | 109 | 3 | 92 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 k+lt dv+ + +++p ++eh +g+ +s + +++d+ +++W+++l rk++g+ vltkGW +Fvk gL++gD v+F l+g+++ +l Gh_D02G2120 18 KILTATDVGVR--FSFPTATMREHfkllEGS--QSLDFQVMDKYSKVWTFRLYTRKNDGHpkPVLTKGWLDFVKRMGLRVGDKVIFVLHGNHNDHL 109 66777777765..7***********977555..7889***************6688888899*************************999877633 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-21 | 14 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.23E-16 | 15 | 115 | No hit | No description |
SuperFamily | SSF101936 | 4.32E-19 | 16 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 7.2E-11 | 16 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-13 | 18 | 108 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.165 | 53 | 115 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MHMQSSESEP VMKVLCSKIL TATDVGVRFS FPTATMREHF KLLEGSQSLD FQVMDKYSKV 60 WTFRLYTRKN DGHPKPVLTK GWLDFVKRMG LRVGDKVIFV LHGNHNDHLG ILVKRNLKLL 120 GSEHWVDL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109884040 | 1e-101 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481134.1 | 6e-89 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A0D2PY98 | 1e-87 | A0A0D2PY98_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G241200.1 | 2e-88 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17815 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21550.1 | 8e-09 | VP1/ABI3-like 3 |