PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1087
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 323aa    MW: 37230.1 Da    PI: 5.4467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1087genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-08135199650
                  HHHHHHHHHHHHHHHHHHHCTSCC.C......................TTS-STCHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.as...................kapskKlsKaeiLekAveY 50 
                   ++ErrRR+r+N+++  Lr+++Pk +                      + + ++  +iL  +++Y
  Gh_D01G1087 135 LMAERRRRKRLNDRLLMLRSIVPKiSKviycknsdfkplitgfishFLSLQQMDRTSILGDTIDY 199
                  589*********************55477776666666666666663444456666666666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-12124215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.37129203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-7135209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-5135199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-12136216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00181249312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEINEEGLFE ELLDVRGENW DTNPTEMSGI FSNGTWNFDD HKPSSTFLPL PFHQDYTYNF  60
NPIYCPFVDE FSSQSNTFDT PSFPLQQQHD DQESRFLVHQ LHKLDVKATC KTEPVQSPHP  120
DNPAKKLERQ PSKNLMAERR RRKRLNDRLL MLRSIVPKIS KVIYCKNSDF KPLITGFISH  180
FLSLQQMDRT SILGDTIDYT NELLERIKSL QQEVEAGSNM DHIFKGEKPN EMIVRNTPKF  240
EVERRNGDTR IEICCRGDPG LLLSTVSTME ASGLEIQQCV ISCFNDFAMH ASCSEDLEQT  300
TLMRCEDIKK ALFRNAGYGG RCV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137144ERRRRKRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466677.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL14e-64BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0D2NMP00.0A0A0D2NMP0_GOSRA; Uncharacterized protein
STRINGGorai.002G137900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2464234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-59beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]