PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G0038 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | DBB | ||||||||
Protein Properties | Length: 204aa MW: 22688.5 Da PI: 4.8231 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.7 | 3.6e-06 | 11 | 41 | 6 | 36 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++++e++ fC ++ lC C + H+ Gh_D01G0038 11 CEVCDKEEAIVFCPADEAALCGVCDHNVHHA 41 ***************************9743 PP | |||||||
2 | zf-B_box | 31.9 | 2.8e-10 | 59 | 100 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ek++ lfC++++ lC++C +Hk H+ Gh_D01G0038 59 SPLCDICQEKRALLFCQEDRAILCRECDIPIHKAneqttkHN 100 689*****************************8766666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.0E-10 | 6 | 53 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.566 | 6 | 53 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.91E-4 | 11 | 53 | No hit | No description |
SMART | SM00336 | 3.0E-14 | 57 | 104 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.025 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-8 | 59 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.46E-9 | 60 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEQKRKMKIW CEVCDKEEAI VFCPADEAAL CGVCDHNVHH ANKLATKHCR FALLQPDDSP 60 LCDICQEKRA LLFCQEDRAI LCRECDIPIH KANEQTTKHN RFLLTGVKLS SSSSSSTGFP 120 PALNTVSSSS NGSYGGQTIC SEAETTSQSN NEIEKPLATY RIEHNYTIGD DDVLVSMSIS 180 EYLMETLPGW RVDDFLEPSS YAAC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615304 | 1e-139 | JX615304.1 Gossypium hirsutum clone NBRI_GE59224 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016715589.1 | 1e-153 | PREDICTED: B-box zinc finger protein 20-like isoform X1 | ||||
Swissprot | Q0IGM7 | 2e-67 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
TrEMBL | A0A1U8LQV9 | 1e-151 | A0A1U8LQV9_GOSHI; B-box zinc finger protein 20-like isoform X1 | ||||
STRING | Gorai.002G004700.1 | 1e-135 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6597 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 1e-67 | DBB family protein |
Publications ? help Back to Top | |||
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