PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A13G2133 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 367aa MW: 40357.7 Da PI: 7.5535 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.8 | 4.3e-32 | 200 | 255 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Gh_A13G2133 200 KQRRCWSSELHKRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 255 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.248 | 197 | 257 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.98E-18 | 198 | 258 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-28 | 198 | 258 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-27 | 200 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.3E-7 | 202 | 253 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 367 aa Download sequence Send to blast |
MDYAQKMRKC HEYVEALEEE RRKIQVFQRE LPLCFELVTQ AIESCKKEMY MQGQSECSEQ 60 TSSDSPVLEE FIPIKRSCNC SEEDDDDDDE NVAAADKKKS DWLRSVQLWN PPSKEDVGKT 120 GSGVQMKGNG GAFQPFHKEK GNVEKKSVEA VGKGNASATA TTTTSASTTE SGSRGIAADD 180 GNTNKKVEKG QQQQQPPQRK QRRCWSSELH KRFLHALQQL GGSHVATPKQ IRELMKVDGL 240 TNDEVKSHLQ KYRLHTRRPS PSINSNGNNP QTPQFVVVGG IWVPPQEYAS VATTAVVSGE 300 TSVTPSPNSG VYAPVAVPLP TLAKPSVQRL QRSQSEDRGS HSEGRVHSNS PSTSSSTHTT 360 TDGFPAF |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.9587 | 0.0 | boll| ovule |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 78329318 | 0.0 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618387.1 | 0.0 | PREDICTED: myb family transcription factor EFM | ||||
Swissprot | Q9FPE8 | 1e-102 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | A0A1U8IEU6 | 0.0 | A0A1U8IEU6_GOSHI; transcription factor LUX-like | ||||
TrEMBL | A0A2P5XGE3 | 0.0 | A0A2P5XGE3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G080200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3491 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68670.1 | 2e-86 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|