PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G0252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 357aa MW: 40918 Da PI: 4.5744 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.3 | 7.8e-36 | 15 | 107 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Flkk ye+++de+++ +isws+n++sf+++d++ef+ ++Lpk+Fkhsnf+SF+RQLn+YgF+k+++++ weF+++ F +g+k+ll++i Gh_A13G0252 15 FLKKCYEMVDDESTDAIISWSQNNDSFIIWDMTEFSVHLLPKFFKHSNFSSFIRQLNIYGFRKIDTDR---------WEFANDGFVRGQKDLLKNIA 102 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Gh_A13G0252 103 RRKHS 107 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 9.3E-37 | 5 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.4E-55 | 11 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.31E-34 | 11 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.0E-31 | 15 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.7E-19 | 15 | 38 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.7E-19 | 53 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 54 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.7E-19 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MVKPSENGSQ SIAPFLKKCY EMVDDESTDA IISWSQNNDS FIIWDMTEFS VHLLPKFFKH 60 SNFSSFIRQL NIYGFRKIDT DRWEFANDGF VRGQKDLLKN IARRKHSPGS EQRKPLQQQP 120 LQQLENTVGS CENNENTALW KEVENLKTDK NALMQELVKL TQFQETADNK VLLLKERLQG 180 MEKSQQQLLS FLIMAMQSPG FLVQLIQPKE NNWRMAEPSN MLEQVTEDGE PIASDNMIVR 240 YQPPMDGTSK PVLAPVVDCE NPHESDNSSD GTKDFWMNID FVKVLMDESH TPFIPPDIHD 300 DGAWEKLLLG NTFLENNDSG NQDKESPLNS EKSPDLELLT DQMGHLISES TKPHRTP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-25 | 2 | 104 | 16 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-25 | 2 | 104 | 16 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-25 | 2 | 104 | 16 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR067421 | 0.0 | KR067421.1 Gossypium hirsutum HSF40 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016697610.1 | 0.0 | PREDICTED: heat stress transcription factor A-8-like | ||||
Refseq | XP_016697611.1 | 0.0 | PREDICTED: heat stress transcription factor A-8-like | ||||
Refseq | XP_017619515.1 | 0.0 | PREDICTED: heat stress transcription factor A-8-like | ||||
Refseq | XP_017619516.1 | 0.0 | PREDICTED: heat stress transcription factor A-8-like | ||||
Swissprot | Q9S7U5 | 1e-108 | HSFA8_ARATH; Heat stress transcription factor A-8 | ||||
TrEMBL | A0A1U8K516 | 0.0 | A0A1U8K516_GOSHI; heat stress transcription factor A-8-like | ||||
STRING | Gorai.N013300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7045 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67970.1 | 1e-110 | heat shock transcription factor A8 |