PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0138
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 618aa    MW: 67846 Da    PI: 6.1619
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0138genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.4e-06254274526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C  f++ G C+ Gd C +aHg
  Gh_A13G0138 254 PCLEFRK-GACPKGDACDYAHG 274
                  8999***.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.4E-1845182IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.97E-1659179IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00626191IPR002110Ankyrin repeat
PROSITE profilePS5029715.93761141IPR020683Ankyrin repeat-containing domain
PfamPF136371.0E-862120No hitNo description
CDDcd002048.90E-1663178No hitNo description
SMARTSM002489.0E-496128IPR002110Ankyrin repeat
PROSITE profilePS5008812.10296131IPR002110Ankyrin repeat
SMARTSM003565.0E-4249275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.831249276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4254275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4280313IPR000571Zinc finger, CCCH-type
SMARTSM0035672284307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MEGELQEHKI GALCKCSLLL ELAASNDLVA FKNEVEEKGL DLGEASLWYG RRIWSRKMGF  60
EERTPLIIAS MFGSVDVLKY IIGSGKIDVN DACGTDGATA LHCAVAGGSD SSVEIVKLLL  120
DASADANRVD ANGSKPIDLV VPALKSLSSS KRKVIELLLK GVSGCVLNEK DESEKTVLPQ  180
LFKEGSEKKE YPIDVSLPDI NNGIYGTDDF RMYTFKVKPC SRAYSHDWTE CPFVHPGENA  240
RRRDPRKYPY SCVPCLEFRK GACPKGDACD YAHGIFESWL HPSQYRTRLC KDEIACARKV  300
CFFAHKLEEL RPVNASTGSA MPSPRSAVIN AADMANLSPL ALGSSALPLP TTSTPPMPPL  360
AVDSSPKSGG LWHKQVNLTP PTLQLPGSRL KTAFNARDFD LEMQLLALEN HASQLQQQQL  420
MDEISSLSSP SCWTKEYSRL EDLKPTKLDD AFGSLDPSLQ SPLKGLSIES VTQTQSQSRQ  480
NMNQFRASYP PNLSSSPVRK PSAFGFDSSA AVAAAVMNSS SPDGKLDWGI QGDELNKLRK  540
SVSFGFRNNN PTATATTNMM PTDADEPDVS WVHSLVKDTA PTEARLHQQQ RYSLSKGVRE  600
TLPPWMEQMY IEQEQMVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.56130.0boll| embryo| leaf| ovule| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017620344.10.0PREDICTED: zinc finger CCCH domain-containing protein 29 isoform X1
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2P5XEH40.0A0A2P5XEH4_GOSBA; Uncharacterized protein
STRINGGorai.013G017600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein