PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0027
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 382aa    MW: 42333.6 Da    PI: 6.881
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0027genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.5e-1097137545
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                  k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gh_A13G0027  97 KILRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 137
                  6679************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.6E-892137No hitNo description
SMARTSM003381.1E-793156IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.28995139IPR004827Basic-leucine zipper domain
CDDcd147083.26E-2297149No hitNo description
PfamPF001707.6E-797137IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-797140No hitNo description
PROSITE patternPS000360100115IPR004827Basic-leucine zipper domain
PfamPF141445.4E-33179254IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MANLYLGFTC GNADSAFNSA KASGQPFLTD RSCIGTLDKG STENWGESDM ADASPRTDIS  60
TDAETDEKNL RFDSEKLNAA VAASDSSDRS KSNLDQKILR RLAQNREAAR KSRLRKKAYV  120
QQLESSRLKL TQLEQELQRA RQQGIFISSS GDQSHSLGGN GAMTFDVEYG RWLEEHNRQI  180
NELRMAVNSH AGDAELRIIV DGVMAHYDEI FRLKSNVAKA DVFHLLSGMW KTPAERCFLW  240
LGGFRSSELL KLLVNQLEPL TEQQLVGVSN LQQSSLQAED ALSQGMEALQ QSLAETLSTG  300
SLGSSSSTGN VANYMGQMAM AMGKLGTLEG FICQADNLRQ QTLQQMHRIL TTRQSARALL  360
AIHDYFSRLR ALSSLWLARP RE
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098589700.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463061.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_012463062.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_012463063.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_012463064.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_012463065.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0D2W1G40.0A0A0D2W1G4_GOSRA; Uncharacterized protein
STRINGGorai.013G004400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-154TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]