PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0002
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 399aa    MW: 44543.3 Da    PI: 10.1273
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0002genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.6e-10112153445
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                   k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gh_A13G0002 112 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 153
                  6889*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.2E-8103156No hitNo description
SMARTSM003384.6E-9109172IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415111155IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.75E-7113156No hitNo description
PfamPF001706.4E-7113153IPR004827Basic-leucine zipper domain
CDDcd147081.06E-20113165No hitNo description
PROSITE patternPS000360116131IPR004827Basic-leucine zipper domain
PfamPF141443.8E-31196270IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MMYLSINIIA KKHKPKDNLF NHIKSSSEAV ADAQFGALSK GHRLNTTKRS CQILYLISWS  60
GELGGSSMAD ASPRTDTSTD DTDEKNQRFG RGQMNAIVAS DSSDRSKDKT DQKTLRRLAQ  120
NREAARKSRL RKKAYVQQLE SSRLKLTQLE QELQRARQQG IFISSSGDQS HSMSGNGALA  180
FDVEYARWLE EHNRKINELR TAVNSHAGDA ELRIIVDSVT THFDDIFRLK GTAAKADVFH  240
ILSGMWKTPA ERCFLWIGGF RSSELLKLLS NQLEPLTEQQ FMGIQKLQQS SQQAEDSLSQ  300
GMEALQQSLA ETLANGSPSA PSGSSGNVAN YMGQMAMAMG KLGTLEGFLL QADNLRQQTL  360
QQMHRILTTR QSARALLAIN DYFSRLRALS SLWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619726.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0B0PVC30.0A0A0B0PVC3_GOSAR; Transcription factor HBP-1b
STRINGGorai.007G352600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-132bZIP family protein