PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2009

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 773aa MW: 84827.6 Da PI: 5.7453

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2009	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	330.1	4.1e-101	411	772	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++L+++Ae v +g+++ aq +Larl++++sp g p+qR+a+yf+eAL+ l+ ++ ++ pp++ + +++ ++ a+k+fsevsP+++f ++t+N Gh_A12G2009 411 LDQLYKAAELVGTGNFSHAQLILARLNHQVSPVGMPLQRAAFYFKEALQVLLLM--NNPVSPPPPRSPTAFDVIFKMGAYKVFSEVSPLIQFVNFTCN 506 679***********************************************98..5556677777777789********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 qa+lea++ +r+Hi+Dfdi+ G+QW++++q+L R++g+pslRiT+++sp+ +++ el +++ L +fA+e+g++fe +v+ ++l++ ++++L + Gh_A12G2009 507 QALLEALDDTDRIHIVDFDIGFGAQWASFMQELPMRSRGAPSLRITAFASPSMHHSIELGLMRDILMQFANEIGLSFELEVVNFDSLDQ-NPHSLPMF 603 *****************************************************************************86666555.56666555 PP GRAS 198 p...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 + +Ea+aVn+ + + +++ + ++++++vk+lsPk+vv +q +d+n+ +F +++++a++ y+ l++sl+a ++s++ +k+Er+l+ + Gh_A12G2009 604 QsngNEAIAVNFPV--WSCSNRPSA----LPHLMRFVKQLSPKIVVSLDQGCDRNDLTFPQHVIHAFQSYTNLLESLDAV-NATSDAVNKIERFLFVP 694 5556****99..444434444....456*****************************************887.799********** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +i++ v + e++ W+ +++aGF+pv++s+++++qa++++++ +++g++ve++++slvl+W++r+L+s+SaWr Gh_A12G2009 695 RIESSVLGHLQT----PEKMPLWSTLFSSAGFTPVTFSNFTETQADCVVKRAQVRGFHVEKRQASLVLCWQQRNLISASAWR 772 **998887....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.248	384	752	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-98	411	772	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MHFELQAKGA VELPGFASIC QQNKWIKQRE ANSFNFENSF YYNNEPEPTS VLHLRRSQSP 60 PTSASTLSSF NGGATGSGGG VNSTGNTNTT AATIAPPETT APNNSKEEWA SELQPIPSEL 120 DLVPGPGGAQ RCNSGLEDWE TMLSESAVSL NQDHSLLRWV AGEVDDPSFG LKQLLQSGSS 180 GPNQGVDFEG NAGVGAVDQG PVSDPIGSLI SSSSGNGISN AALNLGGLPG SGFVPNANNE 240 NEPSCSPVEL VNNIKVLGAT VGSNCNIQNP LFSSPASNFG LPVSLPILYQ QQHQEEKPRI 300 FIGPQQHPQY PNFFLPLAQE HHLFQPLPQR LNSGNLELSS QIPKLPFADA GHELFTRKQQ 360 QQHMGFSQGV QYVPQQQPLM VEKKRVLVPG EEMAQPQHQY QLHQQQQATL LDQLYKAAEL 420 VGTGNFSHAQ LILARLNHQV SPVGMPLQRA AFYFKEALQV LLLMNNPVSP PPPRSPTAFD 480 VIFKMGAYKV FSEVSPLIQF VNFTCNQALL EALDDTDRIH IVDFDIGFGA QWASFMQELP 540 MRSRGAPSLR ITAFASPSMH HSIELGLMRD ILMQFANEIG LSFELEVVNF DSLDQNPHSL 600 PMFQSNGNEA IAVNFPVWSC SNRPSALPHL MRFVKQLSPK IVVSLDQGCD RNDLTFPQHV 660 IHAFQSYTNL LESLDAVNAT SDAVNKIERF LFVPRIESSV LGHLQTPEKM PLWSTLFSSA 720 GFTPVTFSNF TETQADCVVK RAQVRGFHVE KRQASLVLCW QQRNLISASA WRC

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MHFELQAKGA VELPGFASIC QQNKWIKQRE ANSFNFENSF YYNNEPEPTS VLHLRRSQSP  60
PTSASTLSSF NGGATGSGGG VNSTGNTNTT AATIAPPETT APNNSKEEWA SELQPIPSEL  120
DLVPGPGGAQ RCNSGLEDWE TMLSESAVSL NQDHSLLRWV AGEVDDPSFG LKQLLQSGSS  180
GPNQGVDFEG NAGVGAVDQG PVSDPIGSLI SSSSGNGISN AALNLGGLPG SGFVPNANNE  240
NEPSCSPVEL VNNIKVLGAT VGSNCNIQNP LFSSPASNFG LPVSLPILYQ QQHQEEKPRI  300
FIGPQQHPQY PNFFLPLAQE HHLFQPLPQR LNSGNLELSS QIPKLPFADA GHELFTRKQQ  360
QQHMGFSQGV QYVPQQQPLM VEKKRVLVPG EEMAQPQHQY QLHQQQQATL LDQLYKAAEL  420
VGTGNFSHAQ LILARLNHQV SPVGMPLQRA AFYFKEALQV LLLMNNPVSP PPPRSPTAFD  480
VIFKMGAYKV FSEVSPLIQF VNFTCNQALL EALDDTDRIH IVDFDIGFGA QWASFMQELP  540
MRSRGAPSLR ITAFASPSMH HSIELGLMRD ILMQFANEIG LSFELEVVNF DSLDQNPHSL  600
PMFQSNGNEA IAVNFPVWSC SNRPSALPHL MRFVKQLSPK IVVSLDQGCD RNDLTFPQHV  660
IHAFQSYTNL LESLDAVNAT SDAVNKIERF LFVPRIESSV LGHLQTPEKM PLWSTLFSSA  720
GFTPVTFSNF TETQADCVVK RAQVRGFHVE KRQASLVLCW QQRNLISASA WRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-35	433	772	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.26215	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439544.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A0D2RL86	0.0	A0A0D2RL86_GOSRA; Uncharacterized protein
STRING	Gorai.008G238300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16534	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-110	GRAS family protein