PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1908

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 326aa MW: 37226.5 Da PI: 5.4573

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1908	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.8	1.8e-52	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeel+ +yLk+k+eg ++el evi+ +d+yk++PwdLp k + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++ + Gh_A12G1908 6 LPPGFRFHPTDEELIGYYLKRKTEGLEIEL-EVIPVIDLYKFDPWDLPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVC-Q 101 79**************************.99**********95334445667**********************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++g +ktLvfy+grap g +tdW+mheyrl Gh_A12G1908 102 FDVTGYRKTLVFYRGRAPLGDRTDWIMHEYRL 133 889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-59	4	155	IPR003441	NAC domain
PROSITE profile	PS51005	58.27	6	155	IPR003441	NAC domain
Pfam	PF02365	8.6E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGGASLPPGF RFHPTDEELI GYYLKRKTEG LEIELEVIPV IDLYKFDPWD LPEKSFLPKR 60 DLEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QFDVTGYRKT LVFYRGRAPL 120 GDRTDWIMHE YRLSDEPSQG SPNQGAFALC RVVKRNEPKA SDARGEPKAT MVGSSSTNII 180 LPVPRTCNSG NISCEASYPN KESHYTSSEV MQVPRFEPVS VNTDPRGVWV SPDLILDSSK 240 DYPQTCESTA QYFPQHEFPS SLTPWQQYEQ TDFSPSSSYS NFGEIEHDDL SRIGYMSPYS 300 GHASYMDFYG NEGNDQTGLF NYMNPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	5	156	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	5	156	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	5	156	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	5	156	16	166	NO APICAL MERISTEM PROTEIN
4dul_A	1e-52	5	156	16	166	NAC domain-containing protein 19
4dul_B	1e-52	5	156	16	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847232	0.0	KC847232.1 Gossypium hirsutum NAC domain protein NAC55 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636537.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	O49697	1e-105	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A2P5VU79	0.0	A0A2P5VU79_GOSBA; Uncharacterized protein
STRING	Gorai.008G227800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2151	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-108	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]