PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G1560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 345aa MW: 38262.3 Da PI: 6.248 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.9 | 2.1e-14 | 161 | 207 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Gh_A12G1560 161 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 207 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.907 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.3E-12 | 161 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-14 | 162 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.19E-14 | 162 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-13 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.85E-5 | 171 | 210 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 9.4E-5 | 243 | 302 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MCGKKDEDQG ECPQTIHNIQ GYQEQLYMQQ QHQQMQQQQH NIDLFGGTRG GLIFPEVSPI 60 LPWSLPPIHN FNPALFTGNP VRDDDPFLVP PPPTSYGGLF NRRAPSLQFA YDGTSADHLR 120 ILSDTLGPVV QPGSAPFGLQ AELGKMTAQE IMDAKALAAS KSHSEAERRR RERINNHLAK 180 LRSLLPSTTK TDKASLLAEV IQHVKELKRQ TSLIAETSPV PTEIDELTVD TSEEDGKFVI 240 KASLCCEDRS DLLPDLIKTL KALRLKTLKA EITTLGGRVK NVLFITGEED SSSSAEQQQQ 300 QLQYCISSIQ EALKAVMEKT SVDESSSGNV KRQRTNIGIL EHRSL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 171 | ERRRRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016722799.1 | 0.0 | PREDICTED: transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 1e-115 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A1U8MB72 | 0.0 | A0A1U8MB72_GOSHI; transcription factor bHLH30-like | ||||
STRING | Gorai.008G186700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7048 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-89 | bHLH family protein |
Publications ? help Back to Top | |||
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