PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G1361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 382aa MW: 43730.2 Da PI: 6.6603 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 88.7 | 6.5e-28 | 73 | 154 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y++++e Gh_A12G1361 73 WVQDETRSLIAIRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 154 ********************************************************************84...556899***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 63 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.444 | 65 | 129 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.9E-4 | 69 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.05E-29 | 71 | 136 | No hit | No description |
Pfam | PF13837 | 1.2E-21 | 72 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MYLSEKPRSI DLYKEEGPAT ASDMIIEVTT NGDLPPHHHH HHHPPPQQQQ IILGESSCED 60 PEVKAPKKRA ETWVQDETRS LIAIRREMDG LFNTSKSNKH LWEQISAKMR EKGFDRSPTM 120 CTDKWRNLLK EFKKAKHQDR GSGSAKMSYY KEIEEILRER TKNAYKSPTP PPKVDSYMHF 180 ADKGFEDAGM SFGPVEASCR PILNLERRLD HEGHPLAVAA ADAVAASGVP PWNWRETPGN 240 GVDCQAYGGR VITVKFGEYT RRIGIDGSAD AIRDAIKSAF RLRTKRAFLL EDEDHIVHSL 300 DREMPLGNYT LHLDEGLPIK VCLYDESDHI PVHTEEKIFY VEDDYREYLL RRGYTGLREI 360 NGYRNVDNLD DLRTNAIYRG VS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 1e-51 | 67 | 152 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.307 | 0.0 | boll| ovule| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU896413 | 1e-52 | KU896413.1 Hibiscus cannabinus microsatellite HC_ES_37_CTC sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017637912.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1-like isoform X1 | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A0D2T736 | 0.0 | A0A0D2T736_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G163200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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