PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1337
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 374aa    MW: 40866.8 Da    PI: 7.6469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1337genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-1867116255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +gr++AeIrdp++   + r +lg+f+taeeAa a++ a+++++g
  Gh_A12G1337  67 KYRGVRRRP-WGRYAAEIRDPKS---KERRWLGTFDTAEEAACAYDCAARAMRG 116
                  8********.**********843...4999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-1167116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-3067123IPR001471AP2/ERF domain
PROSITE profilePS5103222.15567124IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2167124IPR016177DNA-binding domain
CDDcd000181.28E-3067123No hitNo description
SMARTSM003802.3E-3367132IPR001471AP2/ERF domain
PRINTSPR003672.1E-96879IPR001471AP2/ERF domain
PRINTSPR003672.1E-990106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEEVFRRLNG IPHVPDPDPD PDPHPHPHSI LNPIKCSAST TAVPTNTTTT SKKRFLKENG  60
GPGGTIKYRG VRRRPWGRYA AEIRDPKSKE RRWLGTFDTA EEAACAYDCA ARAMRGMKAR  120
TNFVYPATDP HSPNGPFLPP FNFSNPSQLS IRDLNHTRYQ FGNSSNRPLF AKPPHSMVHH  180
LPFINGTSSS SLSSTFPIPS VLPATTFFNS SPSSSLWLSD NSSGPFTAST MTLPLKDKNS  240
SVATVVPAPA ISTCQADDMG MGLFFPQGPS DSGLLEEIIQ GFLPNPTSRN SGLVCSTTSN  300
CTQHSIVSPP TEMSFTGLNL KEIKNESLGF YMDYHPHLES LNGTANSRVV PNSNEIPPNH  360
LQLGQDSMPD DIFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-20671341476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016715419.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A1U8LQF40.0A0A1U8LQF4_GOSHI; ethylene-responsive transcription factor ESR2-like
STRINGGorai.008G161000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-30DORNROSCHEN-like