PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G0632 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 233aa MW: 24090.8 Da PI: 8.2856 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.6 | 5.8e-38 | 24 | 84 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCds+ntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg++kn k+s Gh_A12G0632 24 EQEQLPCPRCDSNNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTKKNAKRS 84 57899****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 21 | 82 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-32 | 26 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.919 | 28 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 30 | 66 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MPSESGDQSR RLSKVLNPGA PPPEQEQLPC PRCDSNNTKF CYYNNYNFSQ PRHFCKSCRR 60 YWTHGGTLRD IPVGGGTKKN AKRSRTNTHA TATTHNNFPL PATPVLLPIS ANQGSFGIGG 120 ESKGNGGGNG NICGSFTSLL NTQGPGFLAL GGFGLGIAPA LEDVGFGLGR GIWAFSGMGD 180 GAAVVGANGG GAAAATGMGN PWQFEGGETG FVDGGDCFSW PELAISTPGN GFK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:8718629}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636500.1 | 1e-168 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
Swissprot | Q39088 | 4e-64 | DOF34_ARATH; Dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A2P5XT76 | 1e-167 | A0A2P5XT76_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G071900.1 | 1e-166 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2286 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 1e-53 | OBF binding protein 1 |
Publications ? help Back to Top | |||
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