PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0629
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 742aa    MW: 83982.4 Da    PI: 8.6392
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0629genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.5e-171699998
                 HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                  + + + l +p+kf++++g+    s  + l+ +sg +W  +l  +k++g +++++GW+ F++   L+ g f+vF+++g+ +f  +v +f+
  Gh_A12G0629 16 ATIRDKKLGIPRKFVKKYGK--GLSSSVLLTVPSGDTWHAQL--TKSDGVVWFQNGWQAFAEYYSLQYGHFLVFRYEGNGKF--LVLIFD 99
                 34455669**********84..47778***************..********************************998777..999997 PP

2B355.21.3e-17225323198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f+ ++ ps+ +  + +++pk+f+ ++  k++ + +ltl +++g++W+ ++ +y  r+k  + ++  GW++F  an+L++gD++vF+l++++e  l+v 
  Gh_A12G0629 225 FLVIMQPSYINPGRKMCIPKEFTMKFL-KENLG-DLTLCTSEGKTWSTQYwRYisRNKYTKAIIHIGWRQFMLANNLEAGDVCVFELISQTESMLKVI 320
                  667788888888899********8884.44454.9***************433777777779999***********************9877767777 PP

                  EE- CS
           B3  96 vfr 98 
                  ++r
  Gh_A12G0629 321 IYR 323
                  766 PP

3B355.21.3e-17387485199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f+ v+ p +   ++ l +p kf++++  ++  + + +l+ ++gr+W vk+ +   ++++ +    + W+ F+++n+L++gD++vF+l++r+e +++v+
  Gh_A12G0629 387 FKVVMRPRYLILRCSLGIPYKFVKRYLDEE--KEEAILQVSDGRTWVVKFAVkvfTGGQHKA-EFSTWRAFARDNNLEVGDVCVFELINRHENSFKVS 481
                  5556677888889*************4332..3479**************775543333333.3369*********************9988889*** PP

                  EE-S CS
           B3  96 vfrk 99 
                  +f++
  Gh_A12G0629 482 IFSA 485
                  9985 PP

4B351.71.5e-16636727191
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f  ++ ps+v++  rl +p +f +++  +    ++  +  +  +g++W  k+    +++       l +GWk F+k+n+L+ gD++vF+++++++ +
  Gh_A12G0629 636 FTVAMQPSYVSNGYRLAIPLDFSRKYlrN---GSGNAILSMVGDGKTWLTKYHReaKGT--NprAKLIDGWKTFAKDNNLEIGDVCVFEMINSEGYQ 727
                  677899********************642...34445666678*********5544333..24588999********************98655544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-262101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-243101IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-20799No hitNo description
PROSITE profilePS5086313.868101IPR003340B3 DNA binding domain
SMARTSM010192.2E-179101IPR003340B3 DNA binding domain
PfamPF023621.1E-131799IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-22216323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20218323IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-22223323No hitNo description
PfamPF023623.6E-16225323IPR003340B3 DNA binding domain
SMARTSM010193.8E-11225325IPR003340B3 DNA binding domain
PROSITE profilePS5086314.184225325IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-21378484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-21380484IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-23385484No hitNo description
PROSITE profilePS5086313.874387486IPR003340B3 DNA binding domain
PfamPF023628.3E-16387485IPR003340B3 DNA binding domain
SMARTSM010193.0E-15387486IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-21629737IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-21630726IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-21634736No hitNo description
PfamPF023624.6E-15636725IPR003340B3 DNA binding domain
SMARTSM010193.1E-13636738IPR003340B3 DNA binding domain
PROSITE profilePS5086314.438636738IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MFAPKTPHFF KIILEATIRD KKLGIPRKFV KKYGKGLSSS VLLTVPSGDT WHAQLTKSDG  60
VVWFQNGWQA FAEYYSLQYG HFLVFRYEGN GKFLVLIFDM SASEIEYPCK SHIEDHNSDD  120
QVCLKLVKKE AKDDTCDGTL YETPPCKETR KKKKKKKRSR PPCSKPRKKL KTTQKDKNEK  180
DWEDESTREE DMQTKVPRDE HAFGVIEYDK ALQRASSFRS ENPFFLVIMQ PSYINPGRKM  240
CIPKEFTMKF LKENLGDLTL CTSEGKTWST QYWRYISRNK YTKAIIHIGW RQFMLANNLE  300
AGDVCVFELI SQTESMLKVI IYRVRQDTSC SSPLGGINSS ENGGNINSST LGSTESNHDC  360
LMRPMTPVEK ARAILKASNF KSKNPFFKVV MRPRYLILRC SLGIPYKFVK RYLDEEKEEA  420
ILQVSDGRTW VVKFAVKVFT GGQHKAEFST WRAFARDNNL EVGDVCVFEL INRHENSFKV  480
SIFSAAPGAN SSLSSQADDA EASQVASKNC LVPRIEADDD FGNCYAGNSG PAAQLTTIEY  540
QENEEEVNLT DDAIASQVAS KDWLVPKIEA DDDFGKCHVG NSSPAAQFPA IGYQETEEEV  600
QPTISTRPRG PQRLQAGEKA KALQRASGFK SQNPFFTVAM QPSYVSNGYR LAIPLDFSRK  660
YLRNGSGNAI LSMVGDGKTW LTKYHREAKG TNPRAKLIDG WKTFAKDNNL EIGDVCVFEM  720
INSEGYQLSL NVAIYKPHED QT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1620773125144B3 domain-containing transcription factor VRN1
4i1k_B5e-1620773125144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RKKKKKKKR
2149170RKKKKKKKRSRPPCSKPRKKLK
3151157KKKKKKR
4153168KKKKRSRPPCSKPRKK
5154169KKKRSRPPCSKPRKKL
6155168KKRSRPPCSKPRKK
7165171PRKKLKT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6167621e-158JX616762.1 Gossypium hirsutum clone NBRI_GE61640 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635905.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A1U8N7B60.0A0A1U8N7B6_GOSHI; B3 domain-containing protein Os03g0620400-like
STRINGGorai.008G071300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16925512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-47B3 family protein