PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G0561

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

DBB

Protein Properties

Length: 187aa MW: 20702.6 Da PI: 7.5036

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0561	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.3	6.3e-08	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ +++ fC ++ lC+ C ++ H Gh_A12G0561 4 LCDACESAPAIVFCAADEAALCRACDEKVH 33 6**************************998 PP
2	zf-B_box	27.1	8.9e-09	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H Gh_A12G0561 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91 5799**************************9996655566 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.352	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.21E-6	3	45	No hit	No description
SMART	SM00336	1.8E-7	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.7E-6	4	42	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.774	51	96	IPR000315	B-box-type zinc finger
SMART	SM00336	8.3E-10	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.5E-6	52	91	IPR000315	B-box-type zinc finger
CDD	cd00021	5.03E-6	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MRILCDACES APAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRNLLLRQR VEFPGDKPAH IDETRRGQNH 120 PPKTPVREKQ QNHKVSPVHG ADAAAAAVGH LETDTKMIDL NMKPHRIHGQ ASNNQPTDKD 180 KEKQMEH

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016713438.1	1e-128	PREDICTED: B-box zinc finger protein 19-like
Swissprot	C0SVM5	4e-77	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A0B0PP49	1e-135	A0A0B0PP49_GOSAR; Uncharacterized protein
STRING	Gorai.008G064100.1	1e-120	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2168	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	3e-78	DBB family protein