PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G2177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 27323.9 Da PI: 5.2291 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 8e-17 | 5 | 50 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd+ll+++++++G g W++++ g++R++k+c++rw +yl Gh_A11G2177 5 AWTEEEDQLLKKCIERYGEGKWHRVPLLAGLNRCRKSCRLRWINYL 50 7*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 5.9e-15 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+ + Gh_A11G2177 56 RGTFAEDEVQLIIKLHKLLGNK-WSLIAGRLP-GRTANDVKNYWNCH 100 78999*****************.*********.***********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.47 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-14 | 2 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.06E-27 | 5 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 5 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-15 | 5 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-11 | 5 | 50 | No hit | No description |
PROSITE profile | PS51294 | 24.824 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-14 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-13 | 56 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 58 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.48E-10 | 61 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGGVAWTEEE DQLLKKCIER YGEGKWHRVP LLAGLNRCRK SCRLRWINYL RPNIKRGTFA 60 EDEVQLIIKL HKLLGNKWSL IAGRLPGRTA NDVKNYWNCH LSKKLNNAQE TEEEYQNGMK 120 METLKPQPRC SAMTGSIKPR TQDHFAPKNQ PTIQESTMPT PFNFAEVVKQ QGHEIVKEEE 180 DIEEEAAVGV FFGDLATEDH QFGQLDEVNV LSSTNEGCSK WDWDDLMLDM DLWTDSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-22 | 6 | 106 | 10 | 109 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.369 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC469583 | 0.0 | KC469583.1 Gossypium hirsutum clone 2 R2R3 MYB transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313732.1 | 1e-179 | transcription factor MYB113-like | ||||
Swissprot | Q9FNV9 | 3e-57 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | M9TFA0 | 1e-178 | M9TFA0_GOSHI; R2R3 MYB transcription factor | ||||
STRING | Gorai.007G268800.1 | 1e-155 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17352 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-59 | myb domain protein 113 |
Publications ? help Back to Top | |||
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