PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1640
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 199aa    MW: 21962.2 Da    PI: 7.3976
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1640genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.3e-08333434
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                 ++C+ +e+  ++ fC  ++  lC  C ++ H
  Gh_A11G1640  3 TICDACESAAAIVFCAADEAALCGACDEKVH 33
                 69**************************998 PP
2zf-B_box26.61.2e-085291237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Gh_A11G1640 52 DVPRCDICENAPAFFYCEIDGTSLCLQCDMIVHVGgkrtH 91
                 5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.954147IPR000315B-box-type zinc finger
SMARTSM003364.4E-8147IPR000315B-box-type zinc finger
PfamPF006433.3E-6342IPR000315B-box-type zinc finger
CDDcd000211.24E-5347No hitNo description
SuperFamilySSF578455.95E-54887No hitNo description
PROSITE profilePS501198.835196IPR000315B-box-type zinc finger
SMARTSM003363.1E-105196IPR000315B-box-type zinc finger
PfamPF006431.1E-65285IPR000315B-box-type zinc finger
CDDcd000219.65E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MRTICDACES AAAIVFCAAD EAALCGACDE KVHLCNKLAG RHVRVRLANP SDVPRCDICE  60
NAPAFFYCEI DGTSLCLQCD MIVHVGGKRT HGRYLVLRQR VEFPGYKPGN IEDPASQPLD  120
PSETMRGQNH AAKRTVGENQ QNDKASPVLR MDANADGHLE TGTKMIDLNM KPHRIHGQAS  180
NNQVRALLLC KFLLFFHCI
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677266.11e-135PREDICTED: B-box zinc finger protein 18-like
SwissprotC0SVM55e-68BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1U8IGN81e-134A0A1U8IGN8_GOSHI; B-box zinc finger protein 18-like
STRINGGorai.007G196900.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-70DBB family protein