PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G1476

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 320aa MW: 35281.5 Da PI: 7.512

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G1476	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	161	180	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ Gh_A11G1476 161 FSCPVCCKTFNRYNNLQMHM 180 89*****************9 PP
2	zf-C2H2	13.3	0.00025	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k F k + ++H +++ Gh_A11G1476 245 FTCRKCEKAFAVKGDWRTHEKNC 267 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.02E-5	137	183	No hit	No description
SMART	SM00355	0.28	161	183	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.1E-5	161	180	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.159	161	188	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	163	183	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.03E-6	227	265	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.0E-5	232	265	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	59	245	265	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MTDPYSNLFS GCFNFMPLHP HYATAPTPPN HPNPCSHLHP NSIINSETSG HPLAPSPPGE 60 EALPLINYLS PTRQQENNEP TSSSMEDDKH STVDDEAATV ALHIGLPSPS SDYGFSPSVD 120 LTDNCGVNGN VAASGYPLSC TSKGQYWIPT PTQILVGPTQ FSCPVCCKTF NRYNNLQMHM 180 WGHGSQYRKG PDSLRGSQPT GMLRLPCYCC APGCKHNIDH PRARALKDFR TLQTHYKRKH 240 GIKPFTCRKC EKAFAVKGDW RTHEKNCGKI WYCICGSDFK HKRSLKDHIK AFGPGHGSVG 300 IASFDEDDEP GSEFESSTTT

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016673475.1	0.0	PREDICTED: zinc finger protein WIP2-like
Refseq	XP_017630125.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-122	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1U8I5G0	0.0	A0A1U8I5G0_GOSHI; zinc finger protein WIP2-like
STRING	Gorai.007G177300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-120	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]