PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0749
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 445aa    MW: 48823.8 Da    PI: 10.0294
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0749genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.78.7e-23140185146
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                  d+epgrCrRtDGKkWRCs++v++ +k+CE H+hrg+ rsrk++e+s
  Gh_A11G0749 140 DPEPGRCRRTDGKKWRCSKNVIPYQKYCEQHMHRGCRRSRKPVETS 185
                  79****************************************9975 PP
2WRC61.71.1e-19337375241
          WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 
                   epgrCrRtDGK+WRCsr+v+ ++k+C rH+hrg  + ++
  Gh_A11G0749 337 LEPGRCRRTDGKRWRCSRDVIHDQKYCARHMHRGARK-QT 375
                  59********************************544.44 PP
3QLQ32.82.2e-1271105337
          QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  FT aQl+ L  Q l++Ky+a + +vP +L+ +i+k
  Gh_A11G0749  71 FTTAQLHDLQLQTLIFKYIAGGIQVPVNLVIPIWK 105
                  *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5166615.20870105IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.7E-871104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.906140184IPR014977WRC domain
PfamPF088794.1E-18141183IPR014977WRC domain
PROSITE profilePS5166721.205336382IPR014977WRC domain
PfamPF088794.0E-17338375IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDAQPVQTRI LPDSGRGGGS GAQERLEGKG RTVKMEEEET EKGGSPSIKL GLGIDGTTSE  60
KPVKKHGKCV FTTAQLHDLQ LQTLIFKYIA GGIQVPVNLV IPIWKSVASS FGSAHGGIYE  120
RYPSFVGVSP QGLDYRNMAD PEPGRCRRTD GKKWRCSKNV IPYQKYCEQH MHRGCRRSRK  180
PVETSQSALP DSTSSKFSIR LSENSKNLPT PVSFQYTNPF SCNTSTSHGT TAIESSYVCS  240
NRNSISINAA TSGTIIATMK NDNKNDPKRN KNVTNISEKG EEKLSVSNNN TIKRSSKSGN  300
KATVGNNISP SVGFSPKSVL QVLGNSSSRA YKNEIELEPG RCRRTDGKRW RCSRDVIHDQ  360
KYCARHMHRG ARKQTEVTRP VPVPSVGDCR LPSRLTTAYK AACPALSTSL SISIPRSQHI  420
AEDEKSTSSS SETTISDTND YCLRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.202130.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710874.10.0PREDICTED: growth-regulating factor 9-like
TrEMBLA0A1U8LCJ00.0A0A1U8LCJ0_GOSHI; growth-regulating factor 9-like
STRINGGorai.007G092400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137602024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.16e-47growth-regulating factor 9