PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G0482 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 337aa MW: 38150.6 Da PI: 7.6399 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 25.2 | 4e-08 | 138 | 159 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++CgksF+r nL+ H+r H Gh_A11G0482 138 FCEICGKSFKRDANLRMHMRAH 159 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.3 | 0.0011 | 226 | 249 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk H++++ Gh_A11G0482 226 YRCNRCHkKSFSILVDLKAHLKNC 249 9********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.97E-7 | 133 | 160 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-6 | 134 | 159 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.445 | 137 | 164 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.7E-4 | 137 | 159 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 3.2E-4 | 138 | 157 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 45 | 188 | 221 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 130 | 226 | 247 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MSIPAEAFRI SSEYPGNGGP SLQQLDPIAL AADLRVPLQN LSTVKRKMDS LQDFLSLSVN 60 TNTLISKDQM DLVSSEIADA VHQIITNSAA LLFCAQKTHC RNSNPTPELK PEFEDSDKGE 120 SNVIEVDAVE LLSEHLHFCE ICGKSFKRDA NLRMHMRAHG DQYKTPEALA KISENNSDVK 180 TPGRKTRFSC PYEGCNRNKK HHKFRSLKSV ICVRNHFKRS HCPKMYRCNR CHKKSFSILV 240 DLKAHLKNCG GGEEIKKWKC SCGNGFSRKD KLFRHISLFE GHMPAMVAEE DQKLKGIVVM 300 EEDEQKKACL EDGLFDDLLN GFDSLENYCL QDVLESW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016688021.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
TrEMBL | A0A1U8JCH7 | 0.0 | A0A1U8JCH7_GOSHI; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
STRING | Gorai.007G060600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16077 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 4e-70 | C2H2 family protein |