PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1678
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 451aa    MW: 49888.8 Da    PI: 6.6425
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1678genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.57.7e-10166206545
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                  k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gh_A10G1678 166 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 206
                  7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-8162225IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415164208IPR004827Basic-leucine zipper domain
CDDcd147081.04E-22166218No hitNo description
SuperFamilySSF579596.88E-7166209No hitNo description
PfamPF001707.5E-7166206IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-7167210No hitNo description
PROSITE patternPS000360169184IPR004827Basic-leucine zipper domain
PfamPF141444.4E-34248323IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MPGFDSQLPV TNILCSERST IHPFPVSNFG TFDQSVGFRL EVAVNLSGNG AVFDSAKVSR  60
QEVPSDCDLI GTSDKTPTSF TNYPSTNQVE SPRLQLEKGQ ETNLVSIPSG NTENWGESNM  120
ADGSPKTDIS TDADTDEKSQ RFDRGKSSIV AVSDSSDRSK SNLDQKTLRR LAQNREAARK  180
SRLRKKAYVQ QLESSRLKLT QLEQELQRAR QQGIFISSSG DQSHSMGGNG AMAFDVEYAR  240
WLEEQNRQIN ELRTAVNSHA SDAELRIIVD GVMAHYDEIF RLKSNAAKAD VFHLLSGMWK  300
TPAERCFLWL GGFRSSELLK LLVNQLEPLT EQQLVGIGNL QQSSQQAEDA LSQGMEALQQ  360
SLAETLSTGS LGSSGSSGNV ANYMGQMAMA MGKLGTLEGF IRQADNLRQQ TLQQMHRILT  420
TRQSARALLA IHDYFSRLRA LSSLWLARPR E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.23280.0ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677007.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016677008.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016677009.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016677010.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649120.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649121.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649122.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649123.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649124.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0B0PAK60.0A0A0B0PAK6_GOSAR; Uncharacterized protein
TrEMBLA0A1U8IFY60.0A0A1U8IFY6_GOSHI; transcription factor TGA2-like isoform X1
STRINGGorai.011G217200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-169TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]