PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G1233

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 224aa MW: 25701.9 Da PI: 6.1795

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G1233	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.5	5.1e-19	63	146	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+ +s+ks+ +g +r + C + +++ + +++ +++ +C a+++++++k+g+w+++k++ +HnH+l+ Gh_A10G1233 63 FYDDYARQVGFLTRILSSHKSECDGLLFSRGLGCRGYHDGQTKVEL-----QKQDKQQESCSAMIHLRRDKNGRWVIKKFVRDHNHPLV 146 9*******************************876666655544.....78888999**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-16	63	146	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MYSNISKTKK EEVGEGDLGE QVDDVDGRLE VSTVDESNVH DYDTIQEPYV GMIFESEGAA 60 KTFYDDYARQ VGFLTRILSS HKSECDGLLF SRGLGCRGYH DGQTKVELQK QDKQQESCSA 120 MIHLRRDKNG RWVIKKFVRD HNHPLVIQLG ESRRTLDEEK DNKIQELTAE LRVKKRLSAS 180 YRELLLAVVK EVEDHNNNLS MKVQRTLDNL KKLDAEAKEL LSGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016677729.1	1e-151	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2P5WLE7	1e-150	A0A2P5WLE7_GOSBA; Uncharacterized protein
STRING	Gorai.011G142000.1	1e-142	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22264	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-52	FAR1 family protein