PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G0877

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

DBB

Protein Properties

Length: 172aa MW: 18949.3 Da PI: 6.2915

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0877	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.7	4.1e-07	4	40	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg....H 37 C+ +e+ + fC ++ lC C +++ + H Gh_A10G0877 4 LCDACESAAAVVFCAADEAALCSACDVHKCNKlasrH 40 7*************************98875455556 PP
2	zf-B_box	24.4	6.1e-08	51	89	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++C+ +e+ + ++Ce +++ lC +C ++ H g H Gh_A10G0877 51 VPRCDICENAPGFFYCEIDGSSLCLQCDMAVHVGgkrtH 89 689****************************96655556 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	0.0011	1	45	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.812	1	45	IPR000315	B-box-type zinc finger
CDD	cd00021	4.98E-5	3	43	No hit	No description
SMART	SM00336	1.3E-11	49	94	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.859	49	94	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.3E-5	50	89	IPR000315	B-box-type zinc finger
CDD	cd00021	1.07E-6	52	82	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MRTLCDACES AAAVVFCAAD EAALCSACDV HKCNKLASRH VRVGLENPRD VPRCDICENA 60 PGFFYCEIDG SSLCLQCDMA VHVGGKRTHG RYLLLRQRVE FPGEKPGNVE DPTSQQVGPN 120 DTIRGQNQIT KTTAGEKQQN HKDSPVEEKD AKVDGHHNMG SEMIDLNMKP HW

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in vasculature of leaves and petioles. {ECO:0000269\|PubMed:20872270}.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ383083	1e-44	FQ383083.1 Vitis vinifera clone SS0ABG32YD22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016678598.1	1e-128	PREDICTED: B-box zinc finger protein 18-like isoform X2
Swissprot	Q9SJU5	5e-63	BBX18_ARATH; B-box zinc finger protein 18
TrEMBL	A0A1U8IQA1	1e-126	A0A1U8IQA1_GOSHI; B-box zinc finger protein 18-like isoform X2
STRING	Gorai.007G196900.1	5e-95	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2168	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21320.1	4e-51	DBB family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]