PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G0008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 433aa MW: 48090.9 Da PI: 5.4965 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.5 | 1.5e-33 | 227 | 281 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl Gh_A10G0008 227 KPRMRWTPELHERFVEAVNKLHGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 281 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.732 | 224 | 284 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.23E-18 | 225 | 281 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.6E-25 | 227 | 282 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.2E-31 | 227 | 282 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-10 | 229 | 280 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-22 | 318 | 365 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MTQSEPSKGI GEPYPIAAFP AHKILSIQSE GQSLMAGECS SRLSFPFNSP RSDAKNASSS 60 SSVFCTSLYL SSSSTSETQR QLGNLPFLPH PPTCHQFISS VDSSKSPAVF SEDLNNPYNE 120 GHSEIIMKDF LNLPADASSD GCFYGMHCES DDFGITTEQL ELQFLSDELD IAITDHGENP 180 RLDEIYETYP PSSAKPTVEL KCNQNTNSVS PTIDGPAMSG AAAAVLKPRM RWTPELHERF 240 VEAVNKLHGP EKATPKGVLK LMNVEGLTIY HVKSHLQKYR LAKYMPEKKE ERKTSSSSEE 300 KKPASSSNES DGKKRGGMHI TEALRMQMEV QKQLHEQLEL QRSLQLRIEE HARYLQKMLE 360 EQQKAGNALV PNPNSELPSR IASETEPCES KTESPTSLPS KYKAPNVEDC KLKSSPKRLR 420 MDEAEAEVEN PEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-26 | 227 | 284 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-26 | 227 | 284 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-26 | 227 | 284 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-26 | 227 | 284 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-26 | 227 | 284 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-26 | 227 | 284 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-26 | 227 | 284 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-26 | 227 | 284 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.16559 | 0.0 | ovule |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016711192.1 | 0.0 | PREDICTED: uncharacterized protein LOC107925131 | ||||
Refseq | XP_016711194.1 | 0.0 | PREDICTED: uncharacterized protein LOC107925131 | ||||
Refseq | XP_016711195.1 | 0.0 | PREDICTED: uncharacterized protein LOC107925131 | ||||
Refseq | XP_016711196.1 | 0.0 | PREDICTED: uncharacterized protein LOC107925131 | ||||
Swissprot | Q949U2 | 1e-129 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A2P5WDH0 | 0.0 | A0A2P5WDH0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G001500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6786 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 4e-94 | G2-like family protein |
Publications ? help Back to Top | |||
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