PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0539 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 174aa MW: 18876.1 Da PI: 6.5114 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 52.5 | 1.1e-16 | 122 | 152 | 25 | 55 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Gh_A07G0539 122 YRATPKSVLELMDVKDLTLAHVKSHLQMYRT 152 59****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-6 | 119 | 153 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.7E-15 | 122 | 153 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-11 | 123 | 153 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MSDKGDFTSL NRIPDLSLHI SPPNSAPSSI CAAGDSSFDI WRKDDGVNPK SHSDSSIKPA 60 SQADTQLSLA NPTTSALEAE SESPWEKKSF APLARTDDDN IYHGISLLDV SGLKPIKGIP 120 VYRATPKSVL ELMDVKDLTL AHVKSHLQMY RTIKSTDKPA SSSGNSYSSL HFLY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19399 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016713030.1 | 1e-82 | PREDICTED: uncharacterized protein LOC107926643 | ||||
Refseq | XP_016744096.1 | 3e-81 | PREDICTED: transcription repressor KAN1-like isoform X3 | ||||
TrEMBL | A0A0D2NF65 | 5e-80 | A0A0D2NF65_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8LEM7 | 2e-81 | A0A1U8LEM7_GOSHI; uncharacterized protein LOC107926643 | ||||
TrEMBL | A0A1U8NYR4 | 7e-80 | A0A1U8NYR4_GOSHI; transcription repressor KAN1-like isoform X3 | ||||
TrEMBL | A0A1U8P1K0 | 8e-80 | A0A1U8P1K0_GOSHI; transcription repressor KAN1-like isoform X1 | ||||
TrEMBL | A0A2P5RA65 | 1e-80 | A0A2P5RA65_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G068700.1 | 8e-81 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6606 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17695.1 | 2e-20 | G2-like family protein |