PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0112
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 439aa    MW: 48950.8 Da    PI: 10.0471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0112genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.5e-12262306554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h + Er+RR+++N++f  Lr+llP+      +K +Ka++L+ A eY+ sL
  Gh_A07G0112 262 HMMSERKRREKLNESFVALRSLLPSG-----TKRDKASVLTTAREYLVSL 306
                  8899*********************8.....8**************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.03E-11257310No hitNo description
PROSITE profilePS5088815.11257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-17258326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-14261324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9262306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-12263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDAIFNLDEA SRAEFLNLLM QSTCCSYICL WSYSFLQQAK LRMTAVFMAC RSGEIELGSS  60
SMVQLNMEKE MRSFFSEDQL PQSTDQNRPS SSSSSLRSLS TSSPDSSLIF TVPTTHEPAP  120
SSLQQDAITP SSINDPRRAM QAFSQTRSNI PLPTLESENA AMTRAILAVL TSPSSSSSSS  180
STPFYRNQSL PYNNYRLNPK ASAFKRYATG LGASPATTPA RASLRAQAMM KRAILFYRKF  240
NLARREQLLR SRPGPTSNQL HHMMSERKRR EKLNESFVAL RSLLPSGTKR DKASVLTTAR  300
EYLVSLKAQI LELNRQKQLL EAQILPSKGG AAAIEVNDPS NERVNVRVIP VPESTSEERL  360
ADLRVTVRGE RPIIDILIHL LEFLKLDRNV SLMSIEANTG VSEFGSVNLV SLRLRIKGDG  420
WDESTFQEAV RRLITDLAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265270ERKRRE
2266271RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629649.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A2P5W3600.0A0A2P5W360_GOSBA; Uncharacterized protein
STRINGGorai.001G012400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-61bHLH family protein