PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G3915 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 407aa MW: 46105 Da PI: 5.7702 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.5e-05 | 68 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ Cgk ++++ + +H+++ H Gh_A05G3915 68 YSCGVCGKGYRSSKAYSQHLKSraH 92 99******************98666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.42E-5 | 3 | 36 | No hit | No description |
SMART | SM00355 | 54 | 4 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.95E-6 | 67 | 104 | No hit | No description |
Pfam | PF12874 | 6.6E-4 | 68 | 92 | No hit | No description |
PROSITE profile | PS50157 | 9.743 | 68 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 68 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.67E-7 | 168 | 282 | No hit | No description |
Pfam | PF12756 | 3.8E-26 | 182 | 283 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 33 | 231 | 258 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MPGLTCNACN KEFLDDADQK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QSALAQEKEK 60 QNETPMLYSC GVCGKGYRSS KAYSQHLKSR AHIMQASQGT NHPQEVKAII KPLPRRTMSK 120 PPQPRDRNDD ESQDEWEEVD PEEELVGQAA NSLTHLNVTE DGAGDEMEEE EEEEEELDPC 180 CCFMCDLEHD TIESCMVHMH KLHGFFIPDV EYLKDPEGLL TYLGLKVKRD FMCLYCNERC 240 HPFASLEAVR KHMAAKGHCK VHYGDGDEEE EAELEEFYDY SSSYVDESGK QLVAAGDTGN 300 SVELVGGSEL VITKRSDDGI LSKTLGSREY MRYYRQKPRP SPANNRAITA ALSSRYRSMG 360 IATVQSREQI VRMKVMKAMN RGGVEAMRTK VGMKNNVIRN LPKNVPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6qik_z | 1e-21 | 4 | 391 | 6 | 413 | Cytoplasmic 60S subunit biogenesis factor REH1 |
6qt0_z | 1e-21 | 4 | 391 | 6 | 413 | Cytoplasmic 60S subunit biogenesis factor REH1 |
6qtz_z | 1e-21 | 4 | 391 | 6 | 413 | Cytoplasmic 60S subunit biogenesis factor REH1 |
6ri5_z | 1e-21 | 4 | 391 | 6 | 413 | Cytoplasmic 60S subunit biogenesis factor REH1 |
6s05_z | 1e-21 | 4 | 391 | 6 | 413 | Cytoplasmic 60S subunit biogenesis factor REH1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.12903 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250|UniProtKB:P38344, ECO:0000269|PubMed:24038679}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016726419.1 | 0.0 | PREDICTED: cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like | ||||
Swissprot | Q8H1G5 | 0.0 | REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 | ||||
TrEMBL | A0A1U8MLF6 | 0.0 | A0A1U8MLF6_GOSHI; cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like | ||||
STRING | Gorai.009G068400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3429 | 5 | 11 |
Publications ? help Back to Top | |||
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