PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G1359

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 346aa MW: 37885.2 Da PI: 7.6905

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G1359	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	45	105	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Gh_A05G1359 45 QQQVLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 105 68999*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.5E-34	47	103	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-27	48	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MLSNCEKMII SSTANQWPQN HIDEKDLMAS TARLMEKPSH EQQQQQQVLK CPRCDSSNTK 60 FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRVKRPAAS ATDGASPTSG 120 ANIANTPSQP QMDVSSTSSH HINPLFYGLA NNPSDINLPF PRFSSRVLGA ETVTGYDLQP 180 DVNALGLGFS SGIVSSDTGD GDYRNGFNTN PTKQIQDVVT SNPLLPCYSN IFGSSSTTTA 240 PTIASLLAST LYQHKFMNGG VKNTQLPNQL QALSPFQDLQ MTGNGENGVT MKDIKVEEAQ 300 SRMDWNVQCQ NQLDQMGLSD PTVYWSTTSV GAWNDPANFE SSVSLI

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MLSNCEKMII SSTANQWPQN HIDEKDLMAS TARLMEKPSH EQQQQQQVLK CPRCDSSNTK  60
FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRVKRPAAS ATDGASPTSG  120
ANIANTPSQP QMDVSSTSSH HINPLFYGLA NNPSDINLPF PRFSSRVLGA ETVTGYDLQP  180
DVNALGLGFS SGIVSSDTGD GDYRNGFNTN PTKQIQDVVT SNPLLPCYSN IFGSSSTTTA  240
PTIASLLAST LYQHKFMNGG VKNTQLPNQL QALSPFQDLQ MTGNGENGVT MKDIKVEEAQ  300
SRMDWNVQCQ NQLDQMGLSD PTVYWSTTSV GAWNDPANFE SSVSLI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21514	1e-74	boll

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109869568	1e-74

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU532295	9e-53	EU532295.1 Gossypium barbadense clone I10-23 ISSR marker genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603460.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A0B0M5Z5	0.0	A0A0B0M5Z5_GOSAR; Dof zinc finger DOF1.4-like protein
STRING	Gorai.009G168300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	2e-50	Dof family protein