PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G0407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARR-B | ||||||||
Protein Properties | Length: 697aa MW: 76247.6 Da PI: 5.8668 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.9 | 5.5e-29 | 205 | 258 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl Gh_A05G0407 205 KPRVVWSVELHRKFVSAVNQL-GLEKAVPKKILDLMNVEGLTRENVASHLQKYRL 258 79*******************.********************************8 PP | |||||||
2 | Response_reg | 83 | 9.4e-28 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ +++l+++l+k +y +v+++ ++ al++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ +++ + + Ga Gh_A05G0407 26 VLAVDDDPVCLKVLENLLRKCQY-HVTTTNQAITALKMLRENRnrYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGITHGAC 120 799********************.***************999889*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + Gh_A05G0407 121 DYLLKPVRIEELKN 134 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.1E-171 | 1 | 629 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.1E-42 | 23 | 166 | No hit | No description |
SuperFamily | SSF52172 | 1.04E-35 | 23 | 146 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 4.1E-33 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.799 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.7E-25 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.04E-28 | 27 | 139 | No hit | No description |
SuperFamily | SSF46689 | 1.25E-19 | 202 | 262 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.58 | 202 | 261 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-30 | 203 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-24 | 205 | 258 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 207 | 257 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MTLQEKRGGS NGEDGGKDRF PIGMHVLAVD DDPVCLKVLE NLLRKCQYHV TTTNQAITAL 60 KMLRENRNRY DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMKGITHGAC 120 DYLLKPVRIE ELKNIWQHVV RKKKPDSKDQ INASNQDKSR GGTGETGPTS SSSDQKVSKK 180 RKDQSEDEDE EGDDNGHEDP STQKKPRVVW SVELHRKFVS AVNQLGLEKA VPKKILDLMN 240 VEGLTRENVA SHLQKYRLYL KRLSSVATQQ ANMVAALGSK DPSYLRMGSL DGFGDFRTLT 300 GPGRISSASL SSYQPGGLFG RLNSSAALSL RGISSGVIQS GHSQTLSNPI NGFGKIQPAV 360 VPANQNQNGT LFQGIPTSIN QLSQNKPTNH FGEFNRGNDP NAFGVATNFQ DARVTVGGSS 420 NTLPVSSGNP LLLQSNTQQT QHSGAFGNQS SSLGVTSLNQ EPFDMNVRGS SNFLDHGRCS 480 ENWQSAVQLS SFPSNALSTS EAFSHEQLPN NNLQESISWT SSHLSSSPLD LSSSMANPAN 540 LEDSRGNISQ VGLNNNVIQN IDYTTKQQWG DSRHDYNGNM NNSFSRGDSL VPASGPMMDQ 600 SNLISDKMND VSLFSQFSGD STYVVPHLDG EKSAFDTKPR SNEDFLFETK PQNGFNQNSF 660 EPLENIMMSM IKSDQNNETP LMDGEFGFDA YSLGSCI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-25 | 201 | 264 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017628022.1 | 0.0 | PREDICTED: two-component response regulator ORR24-like | ||||
Swissprot | Q6K8X6 | 1e-140 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A1U8PGG6 | 0.0 | A0A1U8PGG6_GOSHI; two-component response regulator ORR24-like | ||||
STRING | Gorai.009G054200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-123 | response regulator 12 |
Publications ? help Back to Top | |||
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