PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G0019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 29313.3 Da PI: 4.5765 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.5 | 1.4e-14 | 56 | 99 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr l+P+ +K++Ka+i + A++YI++Lq Gh_A05G0019 56 LSERNRRKKLNQRLFALRALVPNI-----TKMDKASIIKDAIDYIQQLQ 99 67*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.393 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-18 | 53 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-17 | 54 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-12 | 55 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.0E-17 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.05E-14 | 58 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MENVSEEYNQ NIWEPNYVFE NEEYSWAMDE LYDNDCSSSP DGAPDSASLS NSSNILSERN 60 RRKKLNQRLF ALRALVPNIT KMDKASIIKD AIDYIQQLQE QEATLQADIM ELENNNNNNP 120 KNHDLPMLLT SKNTNVFDSP IQLLQVYLTP LSHFHRLDLP LVFISSSKML QLNVTPTGDN 180 TLLVSITCTK RADTMLKLCQ LFESLNLKII TANLTVVSAN LFNTLFIRAN EKEKEELKMQ 240 IQTAIAAFNG PQTPPITI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-14 | 54 | 114 | 9 | 69 | Transcription factor MYC2 |
5gnj_B | 7e-14 | 54 | 114 | 9 | 69 | Transcription factor MYC2 |
5gnj_E | 7e-14 | 54 | 114 | 9 | 69 | Transcription factor MYC2 |
5gnj_F | 7e-14 | 54 | 114 | 9 | 69 | Transcription factor MYC2 |
5gnj_G | 7e-14 | 54 | 114 | 9 | 69 | Transcription factor MYC2 |
5gnj_I | 7e-14 | 54 | 114 | 9 | 69 | Transcription factor MYC2 |
5gnj_M | 7e-14 | 54 | 114 | 9 | 69 | Transcription factor MYC2 |
5gnj_N | 7e-14 | 54 | 114 | 9 | 69 | Transcription factor MYC2 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615047 | 5e-32 | JX615047.1 Gossypium hirsutum clone NBRI_GE58830 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016690213.1 | 1e-152 | PREDICTED: transcription factor bHLH35-like isoform X2 | ||||
TrEMBL | A0A1U8JNC8 | 1e-150 | A0A1U8JNC8_GOSHI; transcription factor bHLH35-like isoform X2 | ||||
STRING | Gorai.009G002200.1 | 1e-150 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24921 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 1e-51 | bHLH family protein |